Locus 1482

Sequence ID 3R_DroMel_CAF1
Location 4,286,327 – 4,286,419
Length 92
Max. P 0.565407
window2461

overview

Window 1

Location 4,286,327 – 4,286,419
Length 92
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 82.13
Mean single sequence MFE -19.18
Consensus MFE -14.20
Energy contribution -14.45
Covariance contribution 0.25
Combinations/Pair 1.24
Mean z-score -1.38
Structure conservation index 0.74
SVM decision value 0.06
SVM RNA-class probability 0.565407
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4286327 92 - 27905053
UCCCC-ACCAACCGCUCCCAGCUGCGGGAGUUUAUGUUGAGAUUUACUUUAACUACUCUUGCGCCUGCAACUAUGCAAUAAAUUGUGCGAAAU
.....-......(((...(((.(((((((((....((((((......)))))).))))))))).))).......((((....))))))).... ( -22.20)
>DroPse_CAF1 96364 91 - 1
CGCCUCCCCUCCUGCUCC--UCUGUGGGAGUUUGUGUUCAGAUUUACUUUAACUACUCCUGCGCCUGCAACUAUGCAAUAAAUUUUGCGAAAU
............(((...--..((..(((((..((....((.....))...)).)))))..))...)))....(((((......))))).... ( -17.30)
>DroEre_CAF1 90856 92 - 1
UCCCC-ACCAACCGCUCCCAGCUGCGGGAGUUUAUGUUGAGAUUUACUUUAACUACUCUUGCGCCUGCAACUAUGCAAUAAAUUGUGCGAAAU
.....-......(((...(((.(((((((((....((((((......)))))).))))))))).))).......((((....))))))).... ( -22.20)
>DroWil_CAF1 96754 73 - 1
---------AACUGC---C------AGGA--CACUGUUGAGAUUUACUUAAACUACUCUUGCGCCUGCAACUAUGCAAUAAAUUUAACAAAAU
---------....((---(------((((--.....(((((.....))))).....))))).)).((((....))))................ ( -11.60)
>DroYak_CAF1 90102 93 - 1
UCCCCUACCAACCGCUCCCAGCUGCGGGAGUUUAUGUUGAGAUUUACUUUAACUACUCUUGCGCCUGCAACUAUGCAAUAAAUUGUGCGAAAU
............(((...(((.(((((((((....((((((......)))))).))))))))).))).......((((....))))))).... ( -22.20)
>DroPer_CAF1 96815 91 - 1
CGCCUCCCCUCCUGCUCC--GCUGUGGGAGUUUGUGUUCAGAUUUACUUUAACUACUCCUGCGCCUGCAACUAUGCAAUAAAUUUUGCGAAAU
............(((...--((.(..(((((..((....((.....))...)).)))))..)))..)))....(((((......))))).... ( -19.60)
>consensus
UCCCC_ACCAACCGCUCCC_GCUGCGGGAGUUUAUGUUGAGAUUUACUUUAACUACUCUUGCGCCUGCAACUAUGCAAUAAAUUGUGCGAAAU
............(((........((((((((....((((((.....))).))).))))))))...((((....)))).........))).... (-14.20 = -14.45 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:38 2006