Locus 1480

Sequence ID 3R_DroMel_CAF1
Location 4,282,998 – 4,283,095
Length 97
Max. P 0.500000
window2459

overview

Window 9

Location 4,282,998 – 4,283,095
Length 97
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 81.06
Mean single sequence MFE -26.13
Consensus MFE -14.77
Energy contribution -14.85
Covariance contribution 0.09
Combinations/Pair 1.37
Mean z-score -1.86
Structure conservation index 0.56
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4282998 97 + 27905053
GAAAAUCAAUUUUGAAGGGUAUGAGUAUGGUUUC------CUUC-AACCUUGAGUUACCCGUG----AGGAGGAAACUUUAAUAUUUCGUAUUCAUGCCAUGGAAUUU
.......((((..(...(((((((((((((((((------((((-(....))).....((...----.)))))))))..........)))))))))))).)..)))). ( -26.90)
>DroSec_CAF1 84520 97 + 1
GAAAACCAAUUUUGAAGGGUAUGAGUAUGGUUUC------CUUC-AACCUUGAGUUACCCGUG----AGGAGGAAACUUUAAUAUUUCGUAUUCAUGCCAUGGAAUUU
.......((((..(...(((((((((((((((((------((((-(....))).....((...----.)))))))))..........)))))))))))).)..)))). ( -26.90)
>DroSim_CAF1 84470 97 + 1
GAAAACCAAUUUUGAAGGGUAUGAGUAUGGUUUC------CUUC-AACCUUGAGUUACCCGUG----AGGAGGAGACUUUAAUAUUUCGUAUUCAUGCCAUGGAAUUU
.......((((..(...(((((((((((((((((------((((-(....))).....((...----.)))))))))..........)))))))))))).)..)))). ( -27.00)
>DroEre_CAF1 87626 97 + 1
GAAAUCCAAUUUUGAAGGGUAUGGGUAUGGUUUU------CUUC-AACCUUGAGUUGUCCGGG----GGGAGGAAACUUUAAUAUUUCGUAUUCAUGCCAUGGAAUUU
....((((.........(((((((((((((.(((------((((-..(((.((....)).)))----..)))))))..........))))))))))))).)))).... ( -28.20)
>DroYak_CAF1 86771 98 + 1
AAAAUCCAAUUUUGAAGGGUAUGAGUAUGGUUUU------CUUCGAACCUUGCGUUACCCGUG----AGGAGGUAACUUUAAUAUUUCGUAUUCAAGCCAUGGAAUUU
....((((..(((((((((((...(((.(((((.------....))))).)))..)))))...----..((((((.......))))))...))))))...)))).... ( -25.30)
>DroPer_CAF1 93534 107 + 1
GAAUGCCUGUUCUAAAGGGUAUCAAAUUGGUAACCCAACUCUUC-UGCUCUGGUUUCCGCUUGCACUCGGGGAAAACUCGACUAUUUCGUAUGCAUGACCUGGCCUCU
....(((.........(((((((.....))).))))........-......((((...((.(((..(((((.....))))).......))).))..)))).))).... ( -22.50)
>consensus
GAAAACCAAUUUUGAAGGGUAUGAGUAUGGUUUC______CUUC_AACCUUGAGUUACCCGUG____AGGAGGAAACUUUAAUAUUUCGUAUUCAUGCCAUGGAAUUU
.................(((((((((((((((.............))))...................((((....))))........)))))))))))......... (-14.77 = -14.85 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:36 2006