| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,262,295 – 4,262,385 |
| Length | 90 |
| Max. P | 0.741588 |
| Location | 4,262,295 – 4,262,385 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 69.51 |
| Mean single sequence MFE | -19.60 |
| Consensus MFE | -12.06 |
| Energy contribution | -11.95 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.741588 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4262295 90 + 27905053 CG--UCGUAGUCGCUGC-UGCUGCGGCACAUUGCCAUUUUAUGGCUAAAU-CCACUUUGCCAACACACACACACACA------CAC----U-AGAGCUCCGUUUU---- .(--(..((((.(((((-....))))).....(((((...))))).....-..........................------.))----)-)..))........---- ( -16.90) >DroVir_CAF1 95055 75 + 1 UGCCCCGUGUUUGCGUCGCGUUGUGGCACAUAGCCAUUUUAUGGCUAAAU-CCACUUUAGCUGCCAGCA--A--------------------GAAAUG----------- .......((((.(((..((...((((....(((((((...)))))))...-))))....))))).))))--.--------------------......----------- ( -19.90) >DroSec_CAF1 64060 84 + 1 CG--CCGUAGUCGCUGC-UGCUGCGGCACAUUGCCAUUUUAUGGCUAAAU-CCACUUUGCCA------ACACACACA------CAC----U-GGAGCGCCCUUUU---- .(--(((((((......-.)))))))).....(((((...)))))....(-(((.(.((...------.......))------.).----)-)))..........---- ( -19.90) >DroSim_CAF1 63909 87 + 1 CG--UCGUAGUCGCUGC-UGCUGCGGCACAUUGCCAUUUUAUGGCUAAAUGCCACUUUGCCA-----CACACACACA------CAC----UNGGAGCGCUCUUUU---- ..--..(.((.((((((-....))((((....(((((...)))))....)))).........-----..........------...----....)))))))....---- ( -19.40) >DroYak_CAF1 65967 95 + 1 CG--UCGUAGUCGCUGC-UGCUGCGGCACAUUGCCAUUUUAUGGCUAAAU-CCACUUUGGCAACACACACACACACACAAAUACAC----U-AGAGCACAAU-UU---- .(--(..((((.(((((-....)))))...((((((.....(((......-)))...)))))).....................))----)-)..)).....-..---- ( -21.10) >DroAna_CAF1 66526 101 + 1 AG--ACGUAGUCGCU----GCUGCGGCACAUUGCCAUUUUAUGGCUAAAU-CCACUUUGCCAACACACACACACACGUCUAUACACACACC-CGCAUCCCAUCAUACAA ((--((((.(((((.----...))))).....(((((...))))).....-.......................))))))...........-................. ( -20.40) >consensus CG__UCGUAGUCGCUGC_UGCUGCGGCACAUUGCCAUUUUAUGGCUAAAU_CCACUUUGCCAACACACACACACACA______CAC____U_GGAGCGCCAUUUU____ ......((.(((((........)))))))...(((((...)))))................................................................ (-12.06 = -11.95 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:29 2006