Locus 1473

Sequence ID 3R_DroMel_CAF1
Location 4,258,754 – 4,258,848
Length 94
Max. P 0.934054
window2449

overview

Window 9

Location 4,258,754 – 4,258,848
Length 94
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 92.55
Mean single sequence MFE -32.52
Consensus MFE -27.38
Energy contribution -28.86
Covariance contribution 1.48
Combinations/Pair 1.06
Mean z-score -1.72
Structure conservation index 0.84
SVM decision value 1.23
SVM RNA-class probability 0.934054
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4258754 94 - 27905053
CGCCAGUCGCACUCCCUGAAAAUAUCCUUUCUCCGUGAACAAGGACCCAUCCGUCACACGUGCAAAACGGAUGGGCAGGGGGCUGAAGUUGUUU
...((((..(((((((((......(((((((.....))..)))))(((((((((((....))....)))))))))))))))).))..))))... ( -32.50)
>DroSec_CAF1 60553 94 - 1
CGCCAGUCGCACUCCCUGAAAAUAUCCUUUCUCCGUGAACAAGGACCCAUCCGUCACACGUGCAAAACGGAUCUGCAGGGGGCUGAAGUUGGUU
.((((((..(((((((((...(.((((.......((((....(((....))).))))..((.....)))))).).))))))).))..)))))). ( -29.60)
>DroSim_CAF1 60353 94 - 1
CGCCAGUCGCACUCCGUGAAAAUAUCCUUUCUCCGUGAACAAGGACCCAUCCGUCACACGUGCAAAACGGAUGGGCAGGGGGCUGGAGUUGGUU
.(((((((.((((((.((......(((((((.....))..)))))(((((((((((....))....))))))))))).)))).)))).))))). ( -34.00)
>DroEre_CAF1 63526 94 - 1
CGCCAGUCGCACUCCCAGAAAAUAUCCUUUCUCCGUGAACAAGGACCCAUCCGUCACACGUGCAAUACGGAUGGGCAGGGAGCUCGGUUUGGUU
.((((..((..(((((........(((((((.....))..)))))(((((((((((....))....)))))))))..)))))..))..).))). ( -34.80)
>DroYak_CAF1 62142 94 - 1
CGCCAGUCGCAUUCCCUGCAAAUAUCCUUUCUCCGUGAACAAGGACCCAUCCGUCACACGUGCAAAGCGUAUGGGCAGGGGUCUCGGGUUGGUU
.((((..(....(((((((..((((.((((...((((.....(((....)))....))))...)))).))))..))))))).....)..)))). ( -31.70)
>consensus
CGCCAGUCGCACUCCCUGAAAAUAUCCUUUCUCCGUGAACAAGGACCCAUCCGUCACACGUGCAAAACGGAUGGGCAGGGGGCUGGAGUUGGUU
.(((((...(((((((((......(((((((.....))..)))))(((((((((((....))....)))))))))))))))).))...))))). (-27.38 = -28.86 +   1.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:27 2006