Locus 1471

Sequence ID 3R_DroMel_CAF1
Location 4,246,150 – 4,246,241
Length 91
Max. P 0.677727
window2447

overview

Window 7

Location 4,246,150 – 4,246,241
Length 91
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 80.94
Mean single sequence MFE -25.38
Consensus MFE -12.73
Energy contribution -13.12
Covariance contribution 0.39
Combinations/Pair 1.18
Mean z-score -2.49
Structure conservation index 0.50
SVM decision value 0.30
SVM RNA-class probability 0.677727
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4246150 91 - 27905053
GGUUUAGCUACUGCUCAGGUAUUUUUACCUGUUCAACUGCGAAAUUAAUUGCAAAUUGGAAAGAAAAAGAGCCGCAGUAUGUAAAAAACAA----
.((((.((((((((.((((((....))))))(((((.(((((......)))))..))))).............)))))).))...))))..---- ( -23.20)
>DroPse_CAF1 53870 95 - 1
CUUUUAGCUGCUGGUCUGCUUCUCUUCGCUGAUGAGUGGGGAGAUCAACUGCAAGGCGGACAGAAAAAAGGCAGCUGUAAGUGCGGAUCUACCGU
(((.((((((((.(((((((((((((((((....))))))))))..........)))))))........)))))))).))).((((.....)))) ( -37.40)
>DroSec_CAF1 48025 91 - 1
GGUUUAGCUACUGCUCAGGUACUUUUACCUGUUCAACUGCGAAAUUAAAUGCAAAUUGGAGAGAAAAAGAGCCGCAGUAUGUAAAAAACAA----
.((((.((((((((...(((.(((((..((.(((((.((((........))))..))))).)).))))).))))))))).))...))))..---- ( -22.40)
>DroSim_CAF1 47765 90 - 1
GGUUUAGCUACUGCUCAGGUACUUUUACCUGUUCAACUGCGAAAUUAACUGCAAAUUGGAGAGAAAAAGAGCCGCAGUAUGUAAAAAA-AA----
..(((.((((((((...(((.(((((..((.(((((.((((........))))..))))).)).))))).))))))))).)).)))..-..---- ( -22.10)
>DroEre_CAF1 50930 91 - 1
GGUUUAGCUGCUGCUCAGGUGCUUUUGCCUGAUCAACUGCGAAAUUAAUUGCAAAUUGGAGAGGAAAAGAGCCGCAGUAUGUAAAUAACGA----
.(((((..((((((...(((.(((((.(((..((((.(((((......)))))..))))..)))))))).)))))))))..))))).....---- ( -25.80)
>DroYak_CAF1 49269 91 - 1
GGUUUAGCUACUGCUCAGGUAUUUUAACCUGAUCAACUGCGAAAUAAACUGCAAAUUGGAAAGGAAAAGGGCCGCAGUAUGUAAAUAAUAA----
.(((((..((((((((((((......))))))((((.((((........))))..))))...((.......))))))))..))))).....---- ( -21.40)
>consensus
GGUUUAGCUACUGCUCAGGUACUUUUACCUGAUCAACUGCGAAAUUAACUGCAAAUUGGAGAGAAAAAGAGCCGCAGUAUGUAAAAAACAA____
......((((((((.(((((......)))))......((((........))))....................)))))).))............. (-12.73 = -13.12 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:25 2006