Locus 1470

Sequence ID 3R_DroMel_CAF1
Location 4,244,148 – 4,244,247
Length 99
Max. P 0.933700
window2446

overview

Window 6

Location 4,244,148 – 4,244,247
Length 99
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 94.80
Mean single sequence MFE -23.72
Consensus MFE -19.60
Energy contribution -20.60
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -2.67
Structure conservation index 0.83
SVM decision value 1.23
SVM RNA-class probability 0.933700
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4244148 99 + 27905053
AAUUAUUGGCCACAAAAACCUCAAAUUCAAAAGCUCCGA---CUCGAGUGCACUCAAGGACAUGCAGCUAACAAAGCAGUCUAGCUGUAAUAAGGAGCUAUG
.....(((....)))................((((((..---((.(((....))).))....((((((((((......)).))))))))....))))))... ( -25.60)
>DroSec_CAF1 46020 99 + 1
AAUUAUUUGCCACAAAAACCUCAAACUCAAAAGCUCCGA---CUCGAGUGCACUCAAGGACAUGCAGCUAACAAAGCAGUCUAGCUGUAAUAAGGAGCUAUG
...............................((((((..---((.(((....))).))....((((((((((......)).))))))))....))))))... ( -25.20)
>DroSim_CAF1 45746 99 + 1
AAUUAUUUGCCACAAAAACCUCAAACUCAAAAGCUCCUA---CUCGAGUGCACUCAAGGACAUGCAGCUAACAAAGCAGUCUAGCUGUAAUAAGGAGCUAUG
...............................(((((((.---((.(((....))).))....((((((((((......)).))))))))...)))))))... ( -25.90)
>DroEre_CAF1 48944 99 + 1
AAUUAUUUGCCACAAAAACCUCAAACUCAAAAGCUCCUA---CUCGAGUGCACUCAAGGACAUGCAGCUAACAAAGCAGUCUAGCUGUAAUAAGGAGCUAUG
...............................(((((((.---((.(((....))).))....((((((((((......)).))))))))...)))))))... ( -25.90)
>DroYak_CAF1 47270 99 + 1
AAUUAUUUGCCACAAAAACCUCAAACUCAAAAGCUCCGA---CUCGAGUGCACUCAAGGACAUGCAGCUAACAAAGCAGUCUAGCUGUAAUAAGGAGCUAUG
...............................((((((..---((.(((....))).))....((((((((((......)).))))))))....))))))... ( -25.20)
>DroAna_CAF1 48286 102 + 1
AAUUAUUUGCCACAAAAACCUCAAACUCACGAGCUCCGACCACUCAAGUGCACCCAAGGACAUGCAGCUAACAAAGCAGUCCAGAUGUAAUAGGAAUCUAUG
..............................((..(((...(((....))).......((((.(((..........)))))))..........))).)).... ( -14.50)
>consensus
AAUUAUUUGCCACAAAAACCUCAAACUCAAAAGCUCCGA___CUCGAGUGCACUCAAGGACAUGCAGCUAACAAAGCAGUCUAGCUGUAAUAAGGAGCUAUG
...............................((((((.....((.(((....))).))....((((((((((......)).))))))))....))))))... (-19.60 = -20.60 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:24 2006