Locus 1468

Sequence ID 3R_DroMel_CAF1
Location 4,221,846 – 4,221,948
Length 102
Max. P 0.633904
window2442

overview

Window 2

Location 4,221,846 – 4,221,948
Length 102
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 79.53
Mean single sequence MFE -17.41
Consensus MFE -11.62
Energy contribution -11.51
Covariance contribution -0.11
Combinations/Pair 1.11
Mean z-score -1.37
Structure conservation index 0.67
SVM decision value 0.21
SVM RNA-class probability 0.633904
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4221846 102 - 27905053
AAU--GUGCGCGUGUUUAUCAGAAAUUAAAUGUCAAUUGUUGAAAACUAAUUUCCACGCAUGUUCUCCAAACACAAGCGCCAAC--CUACCUACUCUGCCUUCCAU-
...--(((((((((.......(((((((....(((.....)))....)))))))))))).((((.....))))...))))....--....................- ( -17.11)
>DroSec_CAF1 33009 82 - 1
AAU--GCGCGCGUGUUUAUCAGAAAUUAAAUGUCAAUUGUUGAAAACUAAUUUCCACGCAUGUUCUCCAAACACAAGCGCCCA----------------------C-
...--(((((((((.......(((((((....(((.....)))....)))))))))))).((((.....))))...))))...----------------------.- ( -19.01)
>DroSim_CAF1 33963 102 - 1
AAU--GCGCGCGUGUUUAUCAGAAAUUAAAUGUCAAUUGUUGAAAACUAAUUUCCACGCAUGUUCUCCAAACACAAGCGCCCAUAGCCACCCA--CAGCCACCCAC-
...--(((((((((.......(((((((....(((.....)))....)))))))))))).((((.....))))...)))).............--...........- ( -19.01)
>DroEre_CAF1 35845 90 - 1
AAU--GCGCGCGUGUUUAUCAGAAAUUAAAUGUCAAUUGUUGAAAACUAAUUUCCACGCAUGUUCUCCAAACACAAAC------------CCA--CCGCCGCCCAC-
...--(((((((((.......(((((((....(((.....)))....)))))))))))).((((.....)))).....------------...--..).)))....- ( -15.31)
>DroYak_CAF1 33680 90 - 1
AAU--GCGCGCGUGUUUAUCAGAAAUUAAAUGUCAAUUGUUGAAAACUAAUUUCCACGCAUGUUCUCCAAACACAAAC------------CCA--CCUCCGCCCAC-
...--(((.(((((.......(((((((....(((.....)))....)))))))))))).((((.....)))).....------------...--....)))....- ( -14.41)
>DroAna_CAF1 35518 96 - 1
AGCGAGCGCGCGUGUUUAUCAGAAAUUAAAUGUCAAUUGUUGAAAACUAAUUUCCACGCAUGUACUUUGAGCGGAGCAGCCCCU-----------AGGCCACCCACC
.(((((..((((((.......(((((((....(((.....)))....))))))))))))..)..)))...))((.(..(((...-----------.)))..)))... ( -19.61)
>consensus
AAU__GCGCGCGUGUUUAUCAGAAAUUAAAUGUCAAUUGUUGAAAACUAAUUUCCACGCAUGUUCUCCAAACACAAGCGCCCA_______CCA__CCGCCACCCAC_
.........(((((.......(((((((....(((.....)))....)))))))))))).((((.....)))).................................. (-11.62 = -11.51 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:20 2006