Locus 1467

Sequence ID 3R_DroMel_CAF1
Location 4,218,522 – 4,218,612
Length 90
Max. P 0.604029
window2441

overview

Window 1

Location 4,218,522 – 4,218,612
Length 90
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 79.89
Mean single sequence MFE -18.62
Consensus MFE -13.48
Energy contribution -14.15
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.18
Structure conservation index 0.72
SVM decision value 0.14
SVM RNA-class probability 0.604029
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4218522 90 - 27905053
UGAAACUCUUUCGGGAUGAACAUCCGCAACCAGAUGCGGCUGCAUCCCUUCUUAACUUCCGCUAC--CCUCGCAAUU-----CCAUG-AACUUGAACU
.........(((((((((..((.(((((......))))).))))))))............((...--....))....-----....)-))........ ( -19.50)
>DroSec_CAF1 29778 90 - 1
UGAAACUCUUUCGGGAUGAACAUCCGCAACCAGAUGCGGCUGCAUCCCUCCUUAACUUCCGCUAC--CCUCGCUACU-----CCAUG-AACUUAAACU
.........(((((((((..((.(((((......))))).))))))))............((...--....))....-----....)-))........ ( -19.00)
>DroSim_CAF1 30690 90 - 1
UGAAACUCUUUCGGGAUGAACAUCCGCAACCAGAUGCGGCUGCAUCCCUCCAUAACUUCCGCUAC--CCUCGCUACU-----CCAUG-AACUUGAACU
.........(((((((((..((.(((((......))))).))))))))............((...--....))....-----....)-))........ ( -19.00)
>DroEre_CAF1 32421 91 - 1
UGAAACUCUUUCGGGAUGAACAUCCGCCGCCAGAUGCGGCUGCAUCCCUCUCUUGCU-CCGCUACGCCCCCGCUACU-----CCAUG-AACUUGAACU
.........(((((((((.......(((((.....)))))..)))))).........-.......((....))....-----....)-))........ ( -18.40)
>DroYak_CAF1 30212 93 - 1
UGAAACUCUUUCGGGAUGUACAUCCGCCACCAGAUGCGGCUGCAUCCCCCUCAUGCUUCCGCCACCUCCCCUCUGCU-----CCAUCCAACUUGAACU
.........(((((((((((...((((........)))).))))))))......((....))...............-----...........))).. ( -18.30)
>DroAna_CAF1 32109 89 - 1
AGAAAGUCUUUUUGGAUGUGCAUCCGCCGGCAGCUGCAACUGCAUCACGGCUC-ACU-CC----U--CCUCGCUAUCACGAACUUUG-AACUUGAACU
.((.(((......(((.(((...(((...((((......))))....)))..)-)))-))----.--....))).))..........-.......... ( -17.50)
>consensus
UGAAACUCUUUCGGGAUGAACAUCCGCAACCAGAUGCGGCUGCAUCCCUCCUUAACUUCCGCUAC__CCUCGCUACU_____CCAUG_AACUUGAACU
............((((((..((.((((........)))).)))))))).................................................. (-13.48 = -14.15 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:19 2006