| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,213,687 – 4,213,795 |
| Length | 108 |
| Max. P | 0.939011 |
| Location | 4,213,687 – 4,213,795 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 76.36 |
| Mean single sequence MFE | -43.73 |
| Consensus MFE | -27.92 |
| Energy contribution | -28.07 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.64 |
| SVM decision value | 1.27 |
| SVM RNA-class probability | 0.939011 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4213687 108 + 27905053 AGCAUCCGAG-----------CCCGUCUUGCGCCGCAGCUCCUUCAAGGAGUUGCUCUGCUUGCGGAAGCGGUAGAACGGAUUGUUGAUGCUCAGCUUCUGGAGCAGCACCUGCGUUUC (((((((((.-----------.((((........((((((((.....))))))))((((((.((....)))))))))))).)))..))))))........(((((.((....))))))) ( -41.60) >DroVir_CAF1 43008 119 + 1 CGCAGCUGGCGACGCGCGCGUUUACGCAUGCGCCGCAGCUCCCUGAGGGAGUUGCUCUGCUUGCGAAAGCGAUAGAACGGAUUGUUGAUGCUCAGCUUCUGCAGCAACAGCUGAGUCUC ..((((((.(((((((.(((....))).))).(((((((((((...)))))))))((((.((((....))))))))..))...)))).(((((((...))).)))).))))))...... ( -53.40) >DroGri_CAF1 32044 113 + 1 CGCAAUUGGCGACGA---CGU---CGCAAACGUCGCAACUCCCUCAAUGAGUUGCUCUGCUUGCGAAAGCGAUAAAAAGGAUUAUUGAUGCUCAGCUUUUGCAGCAACAACUGUGUUUC ((((.((((((((..---.))---))).......(((((((.......)))))))..((((.(((((((((((((......)))))(.....).)))))))))))).))).)))).... ( -35.80) >DroEre_CAF1 25603 108 + 1 AGCAUCCGCU-----------CCACCCUGGCGCCGCAGCUCCCUCAAGGAGUUGCUCUGCUUGCGGAAGCGGUAGAACGGAUUGUUGAUGCUCAGCUUCUGAAGCAGCACCUGCGUUUC ((((((((.(-----------(.(((..((((..((((((((.....))))))))..)))).((....))))).)).)))).))))..(((((((...))).))))((....))..... ( -41.20) >DroMoj_CAF1 31806 107 + 1 CGCAUCUGGCGAU------------GCAGGCGGCGCAGCUCGCGCAGCGAAUUGCUCUGCUUGCGAAAGCGGUAGAACGGAUUGUUGAUGCUCAGCUUCUGCAGCAGCAGCUGCGUCUC .(((((....)))------------))....(((((((((.((.((((((.(((.((((((.((....)))))))).))).)))))).(((((((...))).))))))))))))))).. ( -51.10) >DroAna_CAF1 27516 107 + 1 GGUG-CCGGC-----------CUACGCUGGCGGUGGAGCUCUUUGAGGGAGUUGCUCUGCUUGCGGAAGCGGUAGAACGGAUUAUUAAUGCUCAGCUUCUGGAGCAAGACCUGCGUCUC (((.-(((..-----------((((...(((((.(.((((((.....)))))).).)))))(((....)))))))..)))........(((((........)))))..)))........ ( -39.30) >consensus CGCAUCCGGC___________C_ACGCAGGCGCCGCAGCUCCCUCAAGGAGUUGCUCUGCUUGCGAAAGCGGUAGAACGGAUUGUUGAUGCUCAGCUUCUGCAGCAACACCUGCGUCUC .(((.(((..........................((((((((.....))))))))((((((.((....)))))))).))).....((.(((((((...))).)))).))..)))..... (-27.92 = -28.07 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:14 2006