Locus 1463

Sequence ID 3R_DroMel_CAF1
Location 4,212,411 – 4,212,513
Length 102
Max. P 0.760813
window2435

overview

Window 5

Location 4,212,411 – 4,212,513
Length 102
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 87.65
Mean single sequence MFE -42.13
Consensus MFE -33.80
Energy contribution -34.97
Covariance contribution 1.17
Combinations/Pair 1.12
Mean z-score -2.44
Structure conservation index 0.80
SVM decision value 0.50
SVM RNA-class probability 0.760813
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4212411 102 + 27905053
GUCCACUAAAUACCGAGGCAUAGUCGGAACUGCUCAUCGAGUCCGAGUUGAGGGCAGUGUUCCUUACCUUCGACUUGGACGCAAUGGGCAAAGUGCCGAGGU
...........(((..((((((((....)))((((((.(.((((((((((((((............)))))))))))))).).))))))...)))))..))) ( -42.60)
>DroPse_CAF1 26971 102 + 1
GGCCACUGAACACGGAGGCAUAGUCCGAGCUGCUCAUCGAGUCCGAAUUGAGGGCCGCCGUGCGUCGCGUGGACUUGGAGGCAAUGGGCAGUGUGCCCAGAU
.(((.(..(.((((((.((((....((.(((.(((((((....)))..)))))))))..)))).)).))))...)..).)))..(((((.....)))))... ( -39.50)
>DroSim_CAF1 24493 102 + 1
GUCCACUAAAUACCGAGGCAUAGUCGGAACUGCUCAUCGAGUCCGAGUUGAGGGCCGUGUUUCUUACCUUCGACUUGGACGCAAUGGGCAAAGUGCCGAGGU
...........(((..((((((((....)))((((((.(.((((((((((((((............)))))))))))))).).))))))...)))))..))) ( -42.60)
>DroEre_CAF1 24327 102 + 1
GUCCACUGAACACCGAGGCAUAGUCGGAACUGCUCAUCGAGUCCGAGUUGAGGGCAGUGGUCCUUGCCUUCGACUUGGACGCUAUGGGCAAAGUGCCGAGGU
...........(((..((((((((....)))((((((.(.(((((((((((((((((......))))))))))))))))).).))))))...)))))..))) ( -49.30)
>DroYak_CAF1 24063 102 + 1
GUCCACUGAAUACCGAGGCAUAGUCGGAACUGCUCAUCGAGUCCGAGUUGAGGGCAGUGUUCCUUACCUUCGCUUUGGACGCUAUGGGCAAAGUGCCGAGGU
...........(((..((((((((....)))((((((.(.(((((((.((((((............)))))).))))))).).))))))...)))))..))) ( -35.90)
>DroAna_CAF1 26178 102 + 1
GUCCACUGAACACAGAGGCGUAGUCGGAACUGCUCAUCGAGUCCGAGUUUAAGGCUGAGCUCCUGACCUUCGACUUGGACGCAAUGGGCAGUGUGCCGAGGU
(.((.(((....))).)))....((((.(((((((((.(.(((((((((.(((((.........).)))).))))))))).).)))))))))...))))... ( -42.90)
>consensus
GUCCACUGAACACCGAGGCAUAGUCGGAACUGCUCAUCGAGUCCGAGUUGAGGGCAGUGUUCCUUACCUUCGACUUGGACGCAAUGGGCAAAGUGCCGAGGU
...........(((..((((((((....)))((((((.(.((((((((((((((............)))))))))))))).).))))))...)))))..))) (-33.80 = -34.97 +   1.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:13 2006