| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 762,360 – 762,466 |
| Length | 106 |
| Max. P | 0.963325 |
| Location | 762,360 – 762,466 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 77.54 |
| Mean single sequence MFE | -50.33 |
| Consensus MFE | -37.51 |
| Energy contribution | -38.07 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.75 |
| SVM decision value | 1.55 |
| SVM RNA-class probability | 0.963325 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 762360 106 - 27905053 GCUUGGGUGGGGGAGCCACUGCGUCGCCAGGUAAAUCGCUGGGCGUCACAAUGGGCGGUACAGUGGGUACUGGCGGUGGUGGGGGCUUCGCCGCCACAG---------CAGAAGC (((..(((((.((((((.((((..((((((.....((((((..((((......))))...))))))...))))))..).))).)))))).)))))..))---------)...... ( -53.80) >DroGri_CAF1 21806 100 - 1 GUUUGGGUGGUGGUGCACCCACAUUGCCAGGCAGAUCGCUGGGCGUCACAAUCGGUGGCACACUAGGCACUGGCGGCGGUGCCGGCUUUGUGGCUGCC---UU------------ ...((((((......)))))).......((((((.((((..((((((((.....)))))......(((((((....))))))).)))..)))))))))---).------------ ( -46.90) >DroSim_CAF1 19355 106 - 1 GCUUGGGUGGGGGAGCCACUGCGUCGCCAGGUAAAUCGCUGGGCGUCACAAUGGGCGGCACAGUGGGUACUGGCGGUGGUGGAGGCUUCGCCGCCACUG---------CAGAAGC ((...(((((.((((((.((((..((((((.....(((((((.((((......)))).).))))))...))))))..).))).)))))).)))))...)---------)...... ( -56.30) >DroEre_CAF1 19290 106 - 1 GUUUAGGUGGGGGAGCCACUGCGUCGCCAGGUAAAUCGCUGGGCGUCACAAUGGGCGGCACAGUGGGCACUGGCGGUGGUGGGGGCUUCGCCGCUACAC---------CGGAUUC .....(((((.((((((.((((..((((((.....(((((((.((((......)))).).))))))...))))))..).))).)))))).)))))....---------....... ( -50.70) >DroYak_CAF1 21334 106 - 1 GUUUGGGUGGGGGAGCCACAGCGUCGCCAGGUAAAUCGCUGGGCGUCACAAUGGGUGGCACAGUGGGUACUGGCGGUGGUGGGGGCUUCGCCGCUACAC---------CAGAAAC .(((((((((.((((((.((.(..((((((.....((((((...(((((.....))))).))))))...))))))..).))..)))))).))))....)---------))))... ( -53.40) >DroAna_CAF1 19532 115 - 1 GCUUGGGCGGCGGAGCAACCACUUCCCCGGGUAGGUCGCUGGGCGUUACAAUGGGUGGUAUAGUGGGCACAGGUGGUGGCGGAGGCUUCACCACAGCUUGGGGUGGAGCAGGAGC ((((..((...((.....)).((.((((((((.(.((((((.((..(((.....))))).)))))).)....((((((((....))..)))))).)))))))).)).))..)))) ( -40.90) >consensus GCUUGGGUGGGGGAGCCACUGCGUCGCCAGGUAAAUCGCUGGGCGUCACAAUGGGCGGCACAGUGGGCACUGGCGGUGGUGGGGGCUUCGCCGCUACAC_________CAGAAGC .....(((((.((((((.((((..((((((.....(((((((.((((......)))).).))))))...))))))...)))).)))))).))))).................... (-37.51 = -38.07 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:23 2006