Locus 1457

Sequence ID 3R_DroMel_CAF1
Location 4,196,278 – 4,196,369
Length 91
Max. P 0.701335
window2423

overview

Window 3

Location 4,196,278 – 4,196,369
Length 91
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 83.49
Mean single sequence MFE -28.92
Consensus MFE -24.68
Energy contribution -24.12
Covariance contribution -0.56
Combinations/Pair 1.18
Mean z-score -1.62
Structure conservation index 0.85
SVM decision value 0.35
SVM RNA-class probability 0.701335
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4196278 91 - 27905053
AGUGGGGUCUGAGAUUGGUG-GGGGGGGUUAGGGGGCGGAUGUAGCCGAGCUUAGCGGAAGCCUGGCUGCAACUGUCAUUGUUGUUGUCCUU
...................(-((.((.(.(((..(((((.((((((((.((((.....)))).)))))))).))))).))).).)).))).. ( -28.50)
>DroSec_CAF1 7689 74 - 1
AGUGGGGUCUGAGAUUGGUG-GG-----------GACGGAUGUAGCCGAGCUUAGCGGAAGCCUGGCUGCAACUGUCG------UUGUCCUU
................((..-(.-----------(((((.((((((((.((((.....)))).)))))))).))))).------)..))... ( -28.90)
>DroSim_CAF1 7897 80 - 1
AGUGGGGUCUGAGAUUGGUG-GG-----------GGCGGAUGUAGCCGAGCUUAGCGGAAGCCUGGCUGCAACUGUCGUUGUCGUUGUCCUU
...((((.(......(((..-(.-----------(((((.((((((((.((((.....)))).)))))))).))))).)..)))..).)))) ( -31.60)
>DroEre_CAF1 8337 78 - 1
AGUGGGGUCUGUGAUUGGAGUGG-----------GGCGGAUGUAGCCGAGCUUAGCGGAAGUCUGGCUGCAACUGUCGUUGUCGUUGUC---
.................((..(.-----------(((((.((((((((..(((.....)))..)))))))).))))).)..))......--- ( -24.30)
>DroYak_CAF1 7981 79 - 1
AGUGAGUUCUGUGAUUGGG--AG-----------GGCGGAUGCAGCCGAGCUUAGCGGAAGUCUGGCUGCAACUGUCGUUGUCGUUGUCGCU
..........(((((.(.(--(.-----------(((((.((((((((..(((.....)))..))))))))....))))).)).).))))). ( -31.30)
>consensus
AGUGGGGUCUGAGAUUGGUG_GG___________GGCGGAUGUAGCCGAGCUUAGCGGAAGCCUGGCUGCAACUGUCGUUGUCGUUGUCCUU
..................................(((((.((((((((.((((.....)))).)))))))).)))))............... (-24.68 = -24.12 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:02 2006