Locus 1455

Sequence ID 3R_DroMel_CAF1
Location 4,193,848 – 4,193,942
Length 94
Max. P 0.686709
window2420

overview

Window 0

Location 4,193,848 – 4,193,942
Length 94
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 89.17
Mean single sequence MFE -34.43
Consensus MFE -30.54
Energy contribution -30.02
Covariance contribution -0.52
Combinations/Pair 1.19
Mean z-score -1.46
Structure conservation index 0.89
SVM decision value 0.32
SVM RNA-class probability 0.686709
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4193848 94 + 27905053
GCUGCAUGGUGGCCACACUGUAGUGGUCCAAACUGUCGAAGGUCUGCAGAUAGUGCGGAUUGAUCUGGGUGCAGUAGUCGCCGCCAGUGUUGCU
((.((((((((((.((((((((.((((((..((((((...........))))))..)))))......).)))))).)).))))))).))).)). ( -36.70)
>DroPse_CAF1 5863 88 + 1
GUUGCAUGGUGGCCACACUGUAGUGAUCCAAGCUAUCGAACGUCUGCAGAUAGUGGGGAUUUAUCUGGGUGCAGUAGUCGCCUCCG------CU
...((..((.(((.((((((((.((((((..((((((...........))))))..)))))......).)))))).)).))).)))------). ( -29.50)
>DroSim_CAF1 5423 94 + 1
GCUGCAUGGUGGCCACACUGUAGUGGUCCAAACUGUCGAAGGUCUGCAGAUAGUGCGGAUUGAUCUGGGUGCAGUAGUCGCCGCCACUGUUGCU
((.((((((((((.((((((((.((((((..((((((...........))))))..)))))......).)))))).)).))))))).))).)). ( -36.70)
>DroEre_CAF1 5852 94 + 1
GCUGCAUGGUGGCCACGCUGUAGUGGUCCAGGCUGUCGAAGGUCUGCAGAUAGUGCGGAUUGAUCUGGGAGCAGUAGUCGCCGCCACUGUUGUU
((.((((((((((.(((((((.....(((((...((((...(((((((.....)))))))))))))))).))))).)).))))))).))).)). ( -36.20)
>DroYak_CAF1 5475 94 + 1
GCUGCAUGGUGGCCACACUGUAGUGGUCCAGGCUGUCGAAGGUCUGCAGAUAGUGCGGAUUGAUCUGGGUGCAGUAGUCGCCGCCAGUGUUGUU
((.((((((((((.((((((((....(((((...((((...(((((((.....)))))))))))))))))))))).)).))))))).))).)). ( -37.30)
>DroPer_CAF1 5862 88 + 1
GUUGCAUGGUGGCCACACUGUAGUGAUCCAGGCUAUCGAAAGUCUGCAGAUAGUGGGGAUUUAUCUGGGUGCAGUAGUCGCCUCCG------CU
...((..((.(((.((((((((.(....((((((......))))))(((((((.......)))))))).)))))).)).))).)))------). ( -30.20)
>consensus
GCUGCAUGGUGGCCACACUGUAGUGGUCCAAGCUGUCGAAGGUCUGCAGAUAGUGCGGAUUGAUCUGGGUGCAGUAGUCGCCGCCA_UGUUGCU
......(((((((.((((((((.((((((..((((((...........))))))..)))))......).)))))).)).)))))))........ (-30.54 = -30.02 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:59 2006