Locus 1454

Sequence ID 3R_DroMel_CAF1
Location 4,186,084 – 4,186,201
Length 117
Max. P 0.560149
window2419

overview

Window 9

Location 4,186,084 – 4,186,201
Length 117
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 82.45
Mean single sequence MFE -30.82
Consensus MFE -19.67
Energy contribution -20.87
Covariance contribution 1.20
Combinations/Pair 1.39
Mean z-score -1.84
Structure conservation index 0.64
SVM decision value 0.05
SVM RNA-class probability 0.560149
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4186084 117 + 27905053
UCCAUUUCGGUUAUGUCCUCUACAUUCGUGUAAUCGAGGUACAUUACCCGGUACUUUGUCUGCUGCCGUGGAACAACUAUAAUCUGUUCCACUUUGCCACGAUACCAGGAACCCUCA
(((.....(((.((((((((((((....))))...)))).)))).))).((((..((((..((....((((((((.........))))))))...)).)))))))).)))....... ( -34.40)
>DroSec_CAF1 16633 117 + 1
UCCAUUUCGGUUACGUCCCCUACGUUCGUGGAAUCGAGGUCCAUUACCCGGUACUUCGUCUGCUGCUGUGGAACAACUAUAAUCUGUUCCACUUUGCCGCGAUGCCAGGAACCCUGA
........((......)).....((((.(((.((((((((((.......)).)))))....((.((.((((((((.........))))))))...)).))))).))).))))..... ( -36.20)
>DroSim_CAF1 4792 117 + 1
UCCACUUCGGUUACGUCCCCUACGUUCGUGUAAUCGAGAUACAUUACCCGGUACUUCGUCUGCUGCUGUGGAACAACUAUAAUCUGUUCCACUUUGCCGCGAUCCCAGUUACCCUCA
.....((((((((((.............))))))))))...........((((((..(((.((.((.((((((((.........))))))))...)).)))))...)).)))).... ( -29.62)
>DroEre_CAF1 15193 117 + 1
UCCAUCUGAGUUAUGUCCUCUACAUUCGUGUAAUCCAGGUUCAUCACCCGGUACUUCGUCUGCUGCUGUGGAGCAACUAUAAUAUGUUCCACUCUGCCGCGAUACCAGGAACCCUCA
((((((((..(((..(...........)..)))..))))).........((((..((((..((....((((((((.........))))))))...)).)))))))).)))....... ( -29.20)
>DroYak_CAF1 1878 117 + 1
UCCGUCUCAGUUAUGUCCUCUACGUUUGUGUAAUCCAGGUACAUUACUCGGUACUUUGUCUGCUGCUGUGGAACAACUAUAAUCUGUUCCACUUUGCCGCGAUACCAGGAACCCUCA
(((((((.(((.(((((((.((((....))))....))).)))).))).)).))..((((.((.((.((((((((.........))))))))...)).))))))...)))....... ( -30.90)
>DroAna_CAF1 3833 117 + 1
UCCUUCUCGGUUAUAUCAUUUACAUUCGUAUAGUCGACGUAAAGCACUCGAUACUCGGUCUGUUGAUUCGGCGAUGUCUUUAUCUGCUCGACUCUGGCACGAUACCAGGAGCCCUCA
..(((((.(((.....................(((((.((.....)))))))..((((((....((.(((((((((....)))).)).))).)).))).))).))))))))...... ( -24.60)
>consensus
UCCAUCUCGGUUAUGUCCUCUACAUUCGUGUAAUCGAGGUACAUUACCCGGUACUUCGUCUGCUGCUGUGGAACAACUAUAAUCUGUUCCACUUUGCCGCGAUACCAGGAACCCUCA
(((((((((((((((.............)))))))))))).........((((..((((..((....((((((((.........))))))))...)).)))))))).)))....... (-19.67 = -20.87 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:58 2006