| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,185,214 – 4,185,324 |
| Length | 110 |
| Max. P | 0.620642 |
| Location | 4,185,214 – 4,185,324 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 84.26 |
| Mean single sequence MFE | -33.27 |
| Consensus MFE | -23.97 |
| Energy contribution | -24.03 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.620642 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4185214 110 - 27905053 UGUGUCAUCUUCGUGUCGCACACGGAGCACGCAAAGUGGUGCACACACCAGGCCUUGUUCAAGGCAGUGAAAACUGUUGGCAUUAUGGAAU-GAGCGCAUU----AAAUAAACCC (((((...(((((((.....))))))).)))))...(((((....))))).((((..(((..((((((....)))))).........))).-.)).))...----.......... ( -33.80) >DroSec_CAF1 15760 114 - 1 UGUGUCAUCUUCGUGUCGCACACGGAGCACGCAAAGUGGUGCACACACCAGGCCUUGUUUAAGGCAGUGAAAACUGUUGGCAUUAUGGAAU-GAGUGCAUUAAUUAAAUAAACCC (((((...(((((((.....))))))).)))))...((((((((.(((((.(((........((((((....)))))))))....)))..)-).))))))))............. ( -36.40) >DroSim_CAF1 3919 114 - 1 UGUGUCAUCUUCGUGUCGCACACGGAGCACGCAAAGUGGUGCACACACCAGGCCUUGUUUAAGGCAGUGAAAACUGUUGGCAUUAUGGAAU-GGGUGCAUUAAUUAAAUAAACCC (((((...(((((((.....))))))).)))))...((((((((...(((..((.(((....((((((....)))))).)))....))..)-))))))))))............. ( -37.30) >DroEre_CAF1 14341 110 - 1 UGUGUCAUCUUCGUGUCACACACGGAGCACGCAAAGUGGUGCACACACCAGGCCUUGUUCAAGGCAGUGAAAACUGUUGGCAUAAUAGAAU-AAGUU----AAUUAAAUAAAUCC (((((((.(((((((.....)))))))(((......(((((....))))).(((((....))))).)))........))))))).......-.....----.............. ( -30.60) >DroYak_CAF1 1036 110 - 1 UGUGUCAUCUUUGUGUCACACACGGAGCACGCAAAGUGGUGCACACACCAGGCCUUGUUCAAGGCAGUGAAAACUGUAGGCAUAAUAGAAA-AUGUG----AAAUAAAUAAGCCC (((((...(((((((.....))))))).)))))...(((((....)))))(((.(((((....(((((....)))))..((((........-)))).----.....)))))))). ( -30.20) >DroMoj_CAF1 15131 113 - 1 UGCGUCAUUUUCGUAUCGCACACGGAGCAGGCAAAGUGAUGAACGCACCAUGCCUUGUUCAAUGCGGUGAAAACUGAAAUGAAAAUGAAAUAAAAUGUAUU--CGAAGUAAAUAU ....((((((((((.(((((....(((((((((..(((.......)))..)))).)))))..)))(((....))))).)))))))))).............--............ ( -31.30) >consensus UGUGUCAUCUUCGUGUCGCACACGGAGCACGCAAAGUGGUGCACACACCAGGCCUUGUUCAAGGCAGUGAAAACUGUUGGCAUAAUGGAAU_AAGUGCAUUAAUUAAAUAAACCC (((((((((((((((.....)))))))(((.....)))))).)))))(((((((((....)))))(((....))).))))................................... (-23.97 = -24.03 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:57 2006