Locus 1451

Sequence ID 3R_DroMel_CAF1
Location 4,178,006 – 4,178,113
Length 107
Max. P 0.632222
window2415

overview

Window 5

Location 4,178,006 – 4,178,113
Length 107
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 84.01
Mean single sequence MFE -29.77
Consensus MFE -18.45
Energy contribution -19.07
Covariance contribution 0.62
Combinations/Pair 1.14
Mean z-score -1.93
Structure conservation index 0.62
SVM decision value 0.20
SVM RNA-class probability 0.632222
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4178006 107 + 27905053
CUAGACACAAAUACAUACAUAAGC-----AAGUGACCCAUGCAAAUGCAUAUAGAU-----GGCUAUAUAGCUUGUGCAUAUGGUAGUAAGUUGGGCGUACUCGUCGCCUGUUUGUU---
......(((((((..........(-----((.(.(((.(((((...((((((((..-----..)))))).))...)))))..)))....).)))((((.......))))))))))).--- ( -26.80)
>DroSim_CAF1 28394 106 + 1
CUAGACACAAAUAC----AUAAGU-----AAGUGACCCAUGCAAAUGCAUAUAGAU-----GGCUAUAUAGCUUGUGCAUAUGGUAGUAAGUUGGGCGUACUCGUCGCUUGUUUGUUUGU
......(((((((.----((((((-----.....(((.(((((...((((((((..-----..)))))).))...)))))..))).........((((....)))))))))).))))))) ( -29.60)
>DroYak_CAF1 28396 108 + 1
CUAGACACAAAUAC----AUAAGU-----AAGUGCCCCAUGCAAAUGCAUAUAGACUUUUAGGCUAUAUAGCUUGUGCAUAUGGUAGUAAGUUGGGCGUACUCGUCGCUUGUUUGUU---
.........((((.----((((((-----.((((((((((((....))))...(((((....(((((((.((....)))))))))...)))))))).)))))....)))))).))))--- ( -30.80)
>DroAna_CAF1 24909 105 + 1
UUAGCCACAAAUAC----AUGAGUAAUUUAAGUAUCACAUGCAAAUGCAUAUAGGU-----GGCUAUGUG---CGGGCAUUUGGUAGUAAGUUGGGCGUACUCGUCGCUUGUUUGUU---
......(((((((.----.....(((((((..(((((.((((...(((((((((..-----..)))))))---)).)))).))))).)))))))((((....))))...))))))).--- ( -31.90)
>consensus
CUAGACACAAAUAC____AUAAGU_____AAGUGACCCAUGCAAAUGCAUAUAGAU_____GGCUAUAUAGCUUGUGCAUAUGGUAGUAAGUUGGGCGUACUCGUCGCUUGUUUGUU___
......((((((..................(.((((..(((((...((((((((.........)))))).))...)))))..)))).).....(((((.......))))))))))).... (-18.45 = -19.07 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:54 2006