Locus 1450

Sequence ID 3R_DroMel_CAF1
Location 4,176,419 – 4,176,539
Length 120
Max. P 0.688511
window2414

overview

Window 4

Location 4,176,419 – 4,176,539
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 89.31
Mean single sequence MFE -46.65
Consensus MFE -42.78
Energy contribution -42.27
Covariance contribution -0.50
Combinations/Pair 1.19
Mean z-score -1.42
Structure conservation index 0.92
SVM decision value 0.32
SVM RNA-class probability 0.688511
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4176419 120 - 27905053
AUCCGACUUCAGCAUUAUGGUGUUGCUCUCUGACUGGGCAGCCGUGGGCGAAAUGGUCAGCUUUGUGCGGUAGGCCACGGACAUGACCAGCGAGCCAACAAUCGUGCUGAGUUGUCCGAU
(((.(((((((((((((((((..(((((.......)))))))))))(((....((((((..(((((((.....).))))))..))))))....))).......))))))))..))).))) ( -45.40)
>DroSim_CAF1 26820 120 - 1
AUCCGACUUCAGCAUGAUGGUGUUGCUCUCUGACUGGGCAGCCGUGGGCGAAAUGGUCAGCUUUGUGCGGUAGGCCACGGACAUGACCAGCGAGCCAACAAUCGUGUUGAGUUCUCCGAU
....((.(((((((((((.(.(((((((.......))))))))((.(((....((((((..(((((((.....).))))))..))))))....))).)).))))))))))).))...... ( -46.20)
>DroYak_CAF1 26841 120 - 1
AUCCGACUUCAGCAUGAUGGUGUUGCUCUCUGACUGGGCAGCCGUGGGCGAGAUGGUCAGCUUGGUGCGGUAGGCCACGGACAUGACCAGCGAGCCAACAAUCGUGCUGAGUUGUCCGAU
(((.((((((((((((((.(.(((((((.......))))))))((.(((..(.((((((.((((((.......)))).))...)))))).)..))).)).)))))))))))..))).))) ( -49.80)
>DroAna_CAF1 23509 120 - 1
GUCGGACUUUAGCAUGAUGGUAUUGCUUUCCGCCUGGGCGGUCGUUGGCGAAAUCGUGAGUUUGGUUCGAUAGGCCACCGACAUCACCAGCGAGCCCACAAUCGUGUUGAGCUGGCCGAU
(((((..(((((((((((.((...((...((((....))))(((((((.((..(((((.(((((......))))))).)))..)).)))))))))..)).)))))))))))....))))) ( -45.20)
>consensus
AUCCGACUUCAGCAUGAUGGUGUUGCUCUCUGACUGGGCAGCCGUGGGCGAAAUGGUCAGCUUGGUGCGGUAGGCCACGGACAUGACCAGCGAGCCAACAAUCGUGCUGAGUUGUCCGAU
(((.((((((((((((((.(.(((((((.......))))))))((.(((....((((((..((((((........))))))..))))))....))).)).)))))))))))..))).))) (-42.78 = -42.27 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:53 2006