| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,174,406 – 4,174,526 |
| Length | 120 |
| Max. P | 0.719290 |
| Location | 4,174,406 – 4,174,526 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.75 |
| Mean single sequence MFE | -44.44 |
| Consensus MFE | -23.16 |
| Energy contribution | -24.52 |
| Covariance contribution | 1.36 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.719290 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4174406 120 + 27905053 AAACGGCAUCGCGACAAUCUGCUGCUGGAUCUGUUGGAGGCGGAGUACACGGCCAAGAGUGACGAGCGCUAUCGCCAACAGAUGCAGCAGGAGCAGAUGUCUCGCCAGCGCACCAGACAG ....(((...(.((((.((((((((((.(((((((((.((((..((.(((........)))))...))))....))))))))).))))...)))))))))).)))).............. ( -48.20) >DroSim_CAF1 24820 120 + 1 AAGCGCCAUCGCGACAAUCUGCUGCUGGAUCUGUUGGAGGCGGAGUACACGGCCAAGAGUGACGAGCGUUAUCGCCAACAAAUGCAGCAGGAGCAGAUGUCUCGCCGGCGCACCAGAGAG ..(((((..((.((((.((((((((((.((.((((((.(((.(......).)))..((.((((....)))))).)))))).)).))))...)))))))))).))..)))))......... ( -51.20) >DroWil_CAF1 10670 120 + 1 AAACGGCAACGGGAGAACGUGCUUCUCGAUUUGCUUGAGUCAGAAUAUAAGGCCAAGGACGACGAGCGCUUUCGCCACCAGCUGCAACAGGAGGAAAUGGAUCGCAUACGCGUUAAAAAA ...((....))((.(((.((((((.(((...(.((((.(((.........))))))).)))).)))))).))).)).(((.((.(....).))....)))..(((....)))........ ( -31.10) >DroYak_CAF1 24500 120 + 1 AAACGCCAUCGCGACAAUUUGCUGCUGGAUCUGUUGGAGGCGGAGUACACGGCCAAGAGUGACGAGCGCUACCGCCAAAAGAUACAGCAGGAGCAGAUGUCUCGGCGGCGCACCAGACAA ...((((..((.((((.((((((((((.((((.((((.((((..((.(((........)))))...))))....)))).)))).))))...)))))))))).))..)))).......... ( -45.00) >DroAna_CAF1 21389 120 + 1 AAACUCCACCGGAACAAUCUCCUGCUGGAUCUGCUGGAGGCAGAGUACAUGGCCAAAAGCGACGAGCGUUUCCGCCAACAGCUUCAGCAGGAGGUGAUGUCUCGGAAGCGCACCAAGCAG ........(((..(((((((((((((((((((((.....))))).....((((...(((((.....)))))..)))).....)))))))))))))..)))..)))..((.......)).. ( -46.70) >consensus AAACGCCAUCGCGACAAUCUGCUGCUGGAUCUGUUGGAGGCGGAGUACACGGCCAAGAGUGACGAGCGCUAUCGCCAACAGAUGCAGCAGGAGCAGAUGUCUCGCCAGCGCACCAGACAG ...(((...((.((((.((((((.(((..(((((.....)))))......(((....((((.....))))...)))...........))).)))))))))).))...))).......... (-23.16 = -24.52 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:52 2006