| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,171,043 – 4,171,157 |
| Length | 114 |
| Max. P | 0.770122 |
| Location | 4,171,043 – 4,171,157 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 67.35 |
| Mean single sequence MFE | -34.36 |
| Consensus MFE | -16.78 |
| Energy contribution | -18.74 |
| Covariance contribution | 1.96 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.49 |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.770122 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4171043 114 + 27905053 CGCAUUUUCCUAGCCGAAAAGAUUCCUGUUCUUAGGGCGAAAGCCCUGGAGGCGGGAGUGUCUGCUGAUGAUUUUACGGUAUGGCAGAGGA--GAGUUUCAUA-UUCUCGAAAAUAA--- ...((((((...((((.....((((((((..(((((((....)))))))..))))))))...(((((.........)))))))))....((--((((.....)-)))))))))))..--- ( -44.60) >DroSim_CAF1 21446 114 + 1 CGCAUUUUCCUAGCCGAAAAGAUUCCGGUUCUUAGGGCAAAAGCCCUGGAGGCGGGAGUGUCUGCUGAUGAUUUUACGGUAUGCCACAGGA--GAGAUUCCUA-UUCUCGAAAAUAA--- ...((((((...((((((..(....)..)))(((((((....))))))).)))((((((.(((.(((..(......)((....)).))).)--)).)))))).-.....))))))..--- ( -36.60) >DroWil_CAF1 7440 107 + 1 CGGAUAUUUGUGGCAGAGAAAACUGAUGAACUGAAGGUUAAAGCUUUGGCGGCUGGAGUGACCGAUGAUGAAUUCACGGCAAGUAUUAAGA--AUG---UAUA-UUCCU-------UUUA ..(((((((((.((((......)))..........(((((.((((.....))))....))))).............).)))))))))....--...---....-.....-------.... ( -19.60) >DroYak_CAF1 21128 119 + 1 CGCAUUUUCCUGGCCGAAAAGAUUCCUGUUCUUAAGGCGAAAGCUCUGGAGGCGGGAGUGUCUGAAGAUGAUUUUACGGUAAGGCAAAGGAAAGAGAUUUAUA-UUCUCGAAAAUAUAUG .....((((((.(((......((((((((..(((..((....))..)))..))))))))..(((.(((....))).)))...)))..))))))((((......-.))))........... ( -35.90) >DroAna_CAF1 17953 115 + 1 CGCAUUUUUGUGGCCGAAAAGCCGGCAGAUCUCAAGGCAAAGGCUGAAGUGGCUGGCGUCACUCCGGAAGAGUAUACGGUAAGUCGGUGGU--AAUAUUGCCACUUUUCUUUAUUAA--- ((((....))))((((....((((((....((...(((....)))..))..))))))...(((.(....))))...))))(((..((((((--(....)))))))...)))......--- ( -35.10) >consensus CGCAUUUUCCUGGCCGAAAAGAUUCCUGUUCUUAAGGCAAAAGCUCUGGAGGCGGGAGUGUCUGCUGAUGAUUUUACGGUAAGGCAGAGGA__GAGAUUCAUA_UUCUCGAAAAUAA___ ............((((.....((((((((..(((((((....)))))))..))))))))(((....))).......))))........................................ (-16.78 = -18.74 + 1.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:50 2006