Locus 1445

Sequence ID 3R_DroMel_CAF1
Location 4,169,823 – 4,169,916
Length 93
Max. P 0.766150
window2407

overview

Window 7

Location 4,169,823 – 4,169,916
Length 93
Sequences 4
Columns 119
Reading direction forward
Mean pairwise identity 75.79
Mean single sequence MFE -21.90
Consensus MFE -19.05
Energy contribution -18.18
Covariance contribution -0.87
Combinations/Pair 1.21
Mean z-score -1.09
Structure conservation index 0.87
SVM decision value 0.52
SVM RNA-class probability 0.766150
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4169823 93 + 27905053
GCAUAGGUGGCGAUGUAUGGUUGUGGCUUGGCUAUAUCAUUGCCUAAAAUCAACAGAGAUCAUGCAAGCAAGCCCACAAAACACAAAUACUCU--------------------------
((((.((((((((((((((((((.....)))))))).))))))).....((....)).)))))))............................-------------------------- ( -20.30)
>DroSim_CAF1 20221 93 + 1
GCAUAGGUGGCGAUGUAUGGUUGUGGCUUGGCUAUAUCAUUGCCUAAAAUCAACAGAGAUCAUGCAAACAAGCCGAUAAGACACAAAUACUUA--------------------------
((((.((((((((((((((((((.....)))))))).))))))).....((....)).)))))))............................-------------------------- ( -20.30)
>DroEre_CAF1 8152 89 + 1
GUAUAGGUGGCGAUGUAUGGUUAUGGCUUGGCUAUAUCAUUGCCUAAAACCAUAAGGGAUCAUGCACACAAGCCCACAAGAUUCAAAUA------------------------------
.....((((((((((((((((((.....)))))))).)))))))....)))....(((....((....))..)))..............------------------------------ ( -22.80)
>DroYak_CAF1 19843 119 + 1
GUAUAGGUGGCGAUGUAUGGUUAUGGCUUGGCUAUAUCAUUGCCUAAAAUCGUAACGGAUCAUGUACACAAGCCCACAAGAUGCAAACACUUAAAUACAAAUAUUAAUAAAAUCAUAAG
(((((((((((((((((((((((.....)))))))).)))))))............(.(((.(((..........))).))).)....)))))..)))..................... ( -24.20)
>consensus
GCAUAGGUGGCGAUGUAUGGUUAUGGCUUGGCUAUAUCAUUGCCUAAAAUCAAAAGAGAUCAUGCAAACAAGCCCACAAGACACAAAUACUUA__________________________
((((.((((((((((((((((((.....)))))))).))))))).....((....)).)))))))...................................................... (-19.05 = -18.18 +  -0.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:46 2006