Locus 1444

Sequence ID 3R_DroMel_CAF1
Location 4,168,030 – 4,168,150
Length 120
Max. P 0.606197
window2406

overview

Window 6

Location 4,168,030 – 4,168,150
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 77.28
Mean single sequence MFE -43.77
Consensus MFE -18.72
Energy contribution -18.28
Covariance contribution -0.44
Combinations/Pair 1.50
Mean z-score -2.15
Structure conservation index 0.43
SVM decision value 0.15
SVM RNA-class probability 0.606197
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4168030 120 + 27905053
CUUUCCGGAUCCUGGCAGACCCACCAUGAUGACCAUUUCGCAGGGGUGGUCAUCGAGGGUCAAGUCAUCCGGAUCAAGCAGAGAUACUUGGUCCUGAACGCUAGUGGGUUCAAAGUCCGG
....((((((..((((.(((((....((((((((((..(...)..)))))))))).)))))..))))...((((((((........))))))))(((((.(....).)))))..)))))) ( -51.90)
>DroPse_CAF1 19158 120 + 1
CUUCCCAGAUCCAGGCAGGCCGACCAUGAUGAUCAUCUCACACGAGUCCUCGUCGAAGUGGACAUCAUUUGGCUCAAACUGGGCUAUUUGGUCGUGCACGCAAGUGGGAUCAAAGUCGGG
...(((((.(((((...((((((..((((((.(((..((..((((....)))).))..))).))))))))))))....))))))).(((((((...(((....))).)))))))...))) ( -43.90)
>DroEre_CAF1 5558 120 + 1
CUUCCCGGAUCCUGGCAGACCUACCAUGAUGACCAUUUCACAGGGGUGGUCAUCGAAGGUCAAGUUAUCUGGAUCAAACAGAGUCACUUGGUCCUGAACGCGAGUGGGAUCGAAGUCUGG
....((((((..((((.(((((....((((((((((..(...)..)))))))))).)))))......((((.......)))))))).((((((((..((....)))))))))).)))))) ( -48.10)
>DroWil_CAF1 4366 120 + 1
CUUACCCGAACCGGGCAGGCCAACCAUUAUGAUCAUUUCGCAUUUAUUCGCAUCGAAUUCCACAUUAUCAGGCUCAAAUUGAGAUAUUGCAUCGUGAACAGCGGUUGGAUCGAAGUCUGG
..........((((((.((((((((.....((.....))((....(((((...)))))....(((.(((((.(((.....)))...))).)).)))....)))))))).))...)))))) ( -27.60)
>DroYak_CAF1 18054 120 + 1
CUUUCCGGAUCCUGGCAGACCCACCAUGAUGACCAUUUCACAGGGGUGGUCAUCGAAGGUCAAGUCGUCUGGUUCAAACAGGGUCACUUGGUCCUGAAUGAUAGUGGGAUCAAAGUCAGG
..........((((((.(((((((..((((((((((..(...)..)))))))))).(((((((((..((((.......))))...)))))).)))........))))).))...)))))) ( -45.70)
>DroPer_CAF1 19070 120 + 1
CUUCCCAGAUCCGGGCAGGCCGACCAUGAUGAUCAUCUCACACGAGUCCUCGUCGAAGUGGACAUCAUUUGGCUCAAACUGGGCUAUUUGGUCGUGCACGCAAGUGGGAUCAAAGUCGGG
((.(((......))).)).(((((.....(((((......(((((((((.(......).)))).(((..((((((.....))))))..))))))))(((....))).)))))..))))). ( -45.40)
>consensus
CUUCCCGGAUCCUGGCAGACCCACCAUGAUGACCAUUUCACAGGGGUGCUCAUCGAAGGUCAAAUCAUCUGGCUCAAACAGAGAUACUUGGUCCUGAACGCAAGUGGGAUCAAAGUCGGG
..........((.(((.(((((((.....(((.....)))(((((.(((((......)))))..(((..((((((.....))))))..)))))))).......))))).))...))).)) (-18.72 = -18.28 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:45 2006