| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 758,306 – 758,396 |
| Length | 90 |
| Max. P | 0.883503 |
| Location | 758,306 – 758,396 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 69.61 |
| Mean single sequence MFE | -19.84 |
| Consensus MFE | -10.27 |
| Energy contribution | -10.47 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.883503 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 758306 90 + 27905053 CAAGAGGUAAGCAACAAUAUCAUAUUAUUUGAUUUUUGAUUAGCGUUGCUUUGACUAAA--------------------------UUUUAAUUCGAUUUAUGAUUAGGGCAACGUU ..............(((.((((.......))))..)))...((((((((((((((((((--------------------------((.......)))))).).))))))))))))) ( -18.40) >DroSec_CAF1 15029 80 + 1 CAAGAGGUAAGCAACAAUAUCAUAGUAUUUGGUUUUUGAUUAGCGUUGCUUUGACUAAU--------------------------G----------GUUAUGGUUAGGGCACCGUU ((((((.((((..((.........)).)))).))))))...((((.(((((((((((..--------------------------.----------....))))))))))).)))) ( -18.00) >DroSim_CAF1 15312 80 + 1 CAAGAGGUAAGCAACAAUAUCAUAUUAUAUGGUUUUUGAUUAGCGUUGCUUUGACUAAU--------------------------G----------GUUAUGGUUAGGGCAACGUU ..............(((.((((((...))))))..)))...((((((((((((((((..--------------------------.----------....)))))))))))))))) ( -22.10) >DroEre_CAF1 15237 79 + 1 CAAGAGGUAAGCAACAAUUUUAUUUUAAUUGAUUUUUGUGUAGCGUUGCUUUGA-------------------------------------UUUUAUUUAUUGUUAGAGCAACGAU ..........((.(((.....(((......))).....))).))((((((((((-------------------------------------(..........)))))))))))... ( -16.80) >DroYak_CAF1 17239 115 + 1 CAAGAGGUAAGCAACA-UUUUAUUUCAUUUGAUUUUUGAUUAGCGUUGCCUUGACUCAAUAAGGGAAAAUUAAAGUAAAAGUAAAAUUGAAUUUGACUUAUUACUAGGGCAACGAU ...((((((((.....-.)))))))).................(((((((((..(((.....)))........(((((((((.((((...)))).)))).)))))))))))))).. ( -23.90) >consensus CAAGAGGUAAGCAACAAUAUCAUAUUAUUUGAUUUUUGAUUAGCGUUGCUUUGACUAAA__________________________G_____UU__AGUUAUGGUUAGGGCAACGUU .....(.(((.(((....((((.......))))..))).))).)((((((((((.................................................))))))))))... (-10.27 = -10.47 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:19 2006