Locus 1439

Sequence ID 3R_DroMel_CAF1
Location 4,154,463 – 4,154,571
Length 108
Max. P 0.542546
window2399

overview

Window 9

Location 4,154,463 – 4,154,571
Length 108
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 85.69
Mean single sequence MFE -18.90
Consensus MFE -11.80
Energy contribution -11.52
Covariance contribution -0.28
Combinations/Pair 1.10
Mean z-score -2.06
Structure conservation index 0.62
SVM decision value 0.02
SVM RNA-class probability 0.542546
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4154463 108 - 27905053
AUGUAUUGCCCUGAAUAUCAAAAACAUCAUUUCAUGCCAAAUUUAUAUUCAAUUCGGGCCCAAC--------GAACUAAAUAUAAGUAUCCAAAUUGGCAGCCAUUUUGGUAUUUC----
............(((((((((((...........(((((((((((((((.(.((((.......)--------))).).))))))))).......))))))....))))))))))).---- ( -19.47)
>DroPse_CAF1 3841 117 - 1
-AAUAUUGCCCUCAAUAUCAAAAACAUCAUUUCAUGCCAAAUUUAUAUUCCAUUUGGGCCCAACACAAAAUUGAA--AAAAAUACAAAUCCAAAUUGGCAGCCAUUUUGAUAUUGCAUUG
-...........(((((((((((..............(((((.........)))))(((((((.......(((..--.......))).......))))..))).)))))))))))..... ( -15.84)
>DroSim_CAF1 3102 108 - 1
AUGUAUUGCCCUGAAUAUCAAAAACAUCAUUUCAUGCCAAAUUUAUAUUCAAUUCGGGCCCAAC--------GAACUAAAUAUAAGUAUCCAAAUUGGCAGCCAUUUUGGUAUUUA----
...........((((((((((((...........(((((((((((((((.(.((((.......)--------))).).))))))))).......))))))....))))))))))))---- ( -20.27)
>DroYak_CAF1 3275 108 - 1
AUGUAUUGCCCUGAAUAUCAAAAACAUCAUUUCAUGCCAAAUUUAUAUUCAAUUCGGGCCCAAC--------GAACUAAAUAUAAGUAUCCAAAUUGGCAGCCAUUUUGGUAUUUU----
............(((((((((((...........(((((((((((((((.(.((((.......)--------))).).))))))))).......))))))....))))))))))).---- ( -19.47)
>DroPer_CAF1 3788 118 - 1
-AAUAUUGCCCUCAAUAUCAAAAACAUCAUUUCAUGCCAAAUUUAUAUUCCAUUUGGGCCCAACACAAA-UGGAAAAAAAAACACAAAUCCAAAUUGGCAGCCAUUUUGAUAUUUCAUUG
-............((((((((((...........((((((.(....)((((((((((......).))))-)))))...................))))))....))))))))))...... ( -19.46)
>consensus
AUGUAUUGCCCUGAAUAUCAAAAACAUCAUUUCAUGCCAAAUUUAUAUUCAAUUCGGGCCCAAC________GAACUAAAUAUAAGUAUCCAAAUUGGCAGCCAUUUUGGUAUUUC____
............(((((((((((.(((......)))....................(((((((...............................))))..))).)))))))))))..... (-11.80 = -11.52 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:38 2006