Locus 1438

Sequence ID 3R_DroMel_CAF1
Location 4,153,921 – 4,154,024
Length 103
Max. P 0.784375
window2398

overview

Window 8

Location 4,153,921 – 4,154,024
Length 103
Sequences 3
Columns 103
Reading direction forward
Mean pairwise identity 87.34
Mean single sequence MFE -19.10
Consensus MFE -15.85
Energy contribution -16.30
Covariance contribution 0.45
Combinations/Pair 1.15
Mean z-score -2.15
Structure conservation index 0.83
SVM decision value 0.57
SVM RNA-class probability 0.784375
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4153921 103 + 27905053
UCAUUCUUAUCAGUAAGGAGAAAAUGUAUAUACAAUAAUAUAUUUGUCUUGUCUGCCUGAUAAGUUGCAACUAGUAUUGCAAUUAAAAAUACUUUGAUUCAAC
(((..((((((((..((((((((((((((........)))))))).))))..))..))))))))((((((......))))))............)))...... ( -20.80)
>DroSim_CAF1 2570 101 + 1
UCAUUCUUAUCAGUAAGGA-AAAAUGUAUACAUAAU-AUAUAUUUGUCUUGUCUGCCUGAUAAGUUGCAACUAAUAUUGCAAUAAAAAAUACUUUGAUUCAAC
(((..((((((((..((((-.(((((((((.....)-)))))))).))))......))))))))((((((......))))))............)))...... ( -20.40)
>DroYak_CAF1 2737 100 + 1
UCAUUCUUAUCAGUGAGGAAAA--UAUAUACAUACA-AUAUAUUCGCCUUGUCUGCUUGAUAAGUUGCCACUAACAUUGCAAUAAAAAAUACUUUAAUUGAAC
(((..(((((((((((((..((--(((((.......-)))))))..))))....)).)))))))((((..........))))................))).. ( -16.10)
>consensus
UCAUUCUUAUCAGUAAGGA_AAAAUGUAUACAUAAU_AUAUAUUUGUCUUGUCUGCCUGAUAAGUUGCAACUAAUAUUGCAAUAAAAAAUACUUUGAUUCAAC
.....(((((((((((((...((((((((........)))))))).))))).....))))))))((((((......))))))..................... (-15.85 = -16.30 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:37 2006