Locus 1436

Sequence ID 3R_DroMel_CAF1
Location 4,152,265 – 4,152,370
Length 105
Max. P 0.566527
window2395

overview

Window 5

Location 4,152,265 – 4,152,370
Length 105
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 81.34
Mean single sequence MFE -30.55
Consensus MFE -19.81
Energy contribution -19.60
Covariance contribution -0.21
Combinations/Pair 1.17
Mean z-score -1.77
Structure conservation index 0.65
SVM decision value 0.07
SVM RNA-class probability 0.566527
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4152265 105 - 27905053
CGUGACCGACACUGGGCAUUCGUCUAUCCAUACAC---------------CCAGCCAUGUACCCAUCUACACGAAGGGUGUACGGAUAGGUGUGCCUCCACCUCCACUGCCACACUGGUG
.(((.....))).((((((...(((((((.(((((---------------((..(..((((......)))).)..))))))).))))))).)))))).((((..............)))) ( -35.04)
>DroSim_CAF1 914 103 - 1
CGUGACCGACACUGGGCGUUCGUCUAUCCAUACAC---------------CCAGCCAUGUACCCAUCCACACGAAGGGUGUACGUAUAGGUGUGCC--CACCUCCACUGCCACACCGGUG
.(((.....)))((((((..(..((((.(.(((((---------------((..(..(((........))).)..))))))).).))))..)))))--))....(((((......))))) ( -29.70)
>DroYak_CAF1 1097 118 - 1
CGUGACCGACACUGGGCAUUCGAACAUCCAUAUACCAUAUAUCCAUCCAUACAUCCAUAUACCCAUCUACACGAAGGGUGUACAUAUGCGUUUGCC--CACCUCCACUGCCACACCGGUG
.(((.....)))((((((..((.......(((((...))))).........(((...(((((((.((.....)).)))))))...)))))..))))--))....(((((......))))) ( -26.90)
>consensus
CGUGACCGACACUGGGCAUUCGUCUAUCCAUACAC_______________CCAGCCAUGUACCCAUCUACACGAAGGGUGUACGUAUAGGUGUGCC__CACCUCCACUGCCACACCGGUG
....((((....((((((.......................................(((((((.((.....)).))))))).....(((((......)))))....)))).)).)))). (-19.81 = -19.60 +  -0.21)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:33 2006