Locus 1434

Sequence ID 3R_DroMel_CAF1
Location 4,147,800 – 4,147,910
Length 110
Max. P 0.983114
window2391

overview

Window 1

Location 4,147,800 – 4,147,910
Length 110
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 73.95
Mean single sequence MFE -34.37
Consensus MFE -15.74
Energy contribution -14.62
Covariance contribution -1.12
Combinations/Pair 1.38
Mean z-score -2.29
Structure conservation index 0.46
SVM decision value 1.93
SVM RNA-class probability 0.983114
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4147800 110 - 27905053
UGCAAUGGUAAAUCACAACAACACGAUUGCAUAAGGCUGCUGCUCGGUGCACCUGGACUUUCUCCUCCAUCUUGGUGC----------AUCGAAUGUCCAUGGCGUCCAUCAUCUUCUGA
((((((.((.............)).))))))...((.((((((((((((((((((((........))))....)))))----------)))))..))....)))).))............ ( -31.12)
>DroSec_CAF1 8759 110 - 1
UGCAAUGGUAAAUCACAACAACACGAUUGCAUAAGGCCGCUGCUCGGUGCACCUGGACCUUCUCCUCCAUCUUGGUGC----------AUCGAAUGUCCAUGGCGUCCAUCAUCUUUUGA
((((((.((.............)).))))))...((.((((((((((((((((((((........))))....)))))----------)))))..))....)))).))............ ( -32.82)
>DroEre_CAF1 8923 110 - 1
UGCAAUGGUAAAUCACAACAACGCGGUUGCAUAAAGCCGCUGCUCGGUGCACCUGGACCUUCUCCUCCAUCUUGGUGC----------ACCGAGUGUCCAUAGCGUCCAUCAUCUUUUGA
.((.((((..............((((((......)))))).((((((((((((((((........))))....)))))----------)))))))..)))).))................ ( -43.00)
>DroWil_CAF1 17680 110 - 1
GGAAAUGGAAAAAUAUAUCCACAUAGUUGCUGCGCACAGCAGUGCGAUGUAUAAGGACA-------CGAUCUUCAUGCUUUUCAAUACGUCGA---UCCAUACGAUCGAGUAACUCGUUG
(((.(((......))).)))....(((((((.(((((....))))(((((((((((.((-------.(.....).))))))...)))))))((---((.....))))))))))))..... ( -26.60)
>DroYak_CAF1 9207 110 - 1
UGCAAUGGUAGAUCACCACAACACGGUUGCAUAGGGCCGCUGCUCGGUGCACCUGGACCUUCUCCUCCAUCUUGGUGC----------AUCGGAUGUCCAUUGCGUCCAUCAUCUUUUGG
.(((((((.(.(((.........((((.((.....)).))))..(((((((((((((........))))....)))))----------))))))).))))))))..(((........))) ( -38.30)
>consensus
UGCAAUGGUAAAUCACAACAACACGGUUGCAUAAGGCCGCUGCUCGGUGCACCUGGACCUUCUCCUCCAUCUUGGUGC__________AUCGAAUGUCCAUAGCGUCCAUCAUCUUUUGA
.((.((((..........................(((....)))(((((((((.(((............))).)))))..........)))).....)))).))................ (-15.74 = -14.62 +  -1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:30 2006