Locus 1433

Sequence ID 3R_DroMel_CAF1
Location 4,147,508 – 4,147,603
Length 95
Max. P 0.585436
window2390

overview

Window 0

Location 4,147,508 – 4,147,603
Length 95
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 71.81
Mean single sequence MFE -28.70
Consensus MFE -16.98
Energy contribution -18.22
Covariance contribution 1.24
Combinations/Pair 1.31
Mean z-score -1.48
Structure conservation index 0.59
SVM decision value 0.10
SVM RNA-class probability 0.585436
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4147508 95 + 27905053
-------------------------UAUUUCGAUCCCGGGAUUCGCUGAUCUACUUAAACAGAUCCAUAGAUCAAAUGGGAUGGAGACUGCCGCCACGAACUAAGCCGUACUGGUGGCUC
-------------------------..((((.((((((.((((....(((((........)))))....))))...)))))).))))..(((((((.(.((......)).)))))))).. ( -33.00)
>DroSec_CAF1 8467 95 + 1
-------------------------UAUUUCGAUCCCGAGACUCGCUGAUCUACUUAAACAGAUCCAUAGAUCAAAUGGGAUGGAGACUUCCGCCACGAACUAAGCCAUACUGGUGGCUC
-------------------------..((((.((((((.((.((...(((((........)))))....))))...)))))).)))).....(((((.(............).))))).. ( -24.20)
>DroEre_CAF1 8631 95 + 1
-------------------------UGCUUCGGUCCAGAGACUCGCUGAUCUACCUAAACAGAUCCAUAGAUCAAAUGGGAUGGAGGCUGCCGCCACGAACGAAGCCAUAUUGGUGGCUU
-------------------------.(((((.((((...((.((...(((((........)))))....)))).....)))).))))).(((((((...............))))))).. ( -29.26)
>DroYak_CAF1 8915 95 + 1
-------------------------UGCUUCGCUCCCGAGACUCGCUGAUCUACUUAAACAGAUCCAUAGAUCAAAUGGGAUGGAGGCUGCCGCCACGAACGAAGCCAUAUUGGUGGCUU
-------------------------.(((((..(((((.((.((...(((((........)))))....))))...)))))..))))).(((((((...............))))))).. ( -28.26)
>DroAna_CAF1 9922 120 + 1
ACCCAAAAAAUGGCAGAAGGACCUAUACUGAGAUCCUUCGAUGCGCUGGCUUACUUCAAUAAAUCAAAAUAUUGUAUUGGUUGGAAUCUACCAUCCCGUGAUGAACCAAAUUGGUGGAUU
............(((((((((.((......)).))))))..))).(..(((.....(((((........)))))....)))..)(((((((((.....((......))...))))))))) ( -28.80)
>consensus
_________________________UACUUCGAUCCCGAGACUCGCUGAUCUACUUAAACAGAUCCAUAGAUCAAAUGGGAUGGAGACUGCCGCCACGAACUAAGCCAUAUUGGUGGCUU
...........................((((.((((((.((.((...(((((........)))))....))))...)))))).))))..(((((((...............))))))).. (-16.98 = -18.22 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:29 2006