Locus 143

Sequence ID 3R_DroMel_CAF1
Location 753,281 – 753,374
Length 93
Max. P 0.946367
window233

overview

Window 3

Location 753,281 – 753,374
Length 93
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 70.64
Mean single sequence MFE -31.68
Consensus MFE -16.62
Energy contribution -14.99
Covariance contribution -1.63
Combinations/Pair 1.52
Mean z-score -1.92
Structure conservation index 0.52
SVM decision value 1.36
SVM RNA-class probability 0.946367
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 753281 93 - 27905053
GUUAUGAUACUGGUAACUUCCGCUGUUGUAACUUCUUUCUUGAAGGGCAGCCGCAUAGGCAGAGGUGCUUGGUUGUUGCAGGAGAA---CAGGAAC
((((..(((.(((......))).)))..))))(((((((((.....(((((.((.((((((....)))))))).)))))..)))))---.)))).. ( -27.50)
>DroVir_CAF1 14767 93 - 1
GUUGUGAUAUUGAUAGUUCAAGCUAUUAUAAUUACGUUCCUGG---GCAGCAGCGUAGGCCGAUGUGCUGGGCUGCUGCAGCAGGGGCAUGGCCAC
...(((((..(((((((....)))))))..)))))(((((((.---((((((((.(((((....)).))).))))))))..)))))))........ ( -40.20)
>DroEre_CAF1 10212 93 - 1
GUUAUGAUACUGGUAACUUCCGCUGUUGUAACUUCUUUCUUGAAGGGCAGCCGCAUAGGCAGAGGUGCUUGGUUGCUGCAGGAGAA---CAGGAAC
((((..(((.(((......))).)))..))))...(((((((...(((((((((((........))))..))))))).))))))).---....... ( -29.90)
>DroWil_CAF1 12379 81 - 1
GUUGUGGUAUUGAUA------GGUAUUGUAGCUACGCUCUUGG---GCGGCAGCAAAGGCAGAAGUACUUGGCUGCUGCAGCAU------AGGCAC
((((..(((((....------)))))..))))...(((..((.---((((((((.(((((....)).))).))))))))..)).------.))).. ( -31.10)
>DroMoj_CAF1 12644 93 - 1
GUUGUGAUAUUGAUAGUUCAAGCUGUUAUAAUUUCGUUCUUGG---GCAGCAGCAUAAGCUGAUGUGCUUGGUUGCUGUAGCAUAGGCAUGGCCAC
((..(((...(((((((....))))))).....))(((..((.---((((((((.(((((......)))))))))))))..))..))))..))... ( -28.70)
>DroAna_CAF1 10530 90 - 1
GUUGUGGUACUGGUAGCUGCCACUGUUGUAGCUCCUCUCCUGGACAGCGGCUGCGUAGGCAGAAGUGCUGGGCUGUUGCAAGAG------CGGCAC
..(((.((.((.(((((.(((...........(((......)))(((((.((((....))))...)))))))).))))).)).)------).))). ( -32.70)
>consensus
GUUGUGAUACUGAUAGCUCCCGCUGUUGUAACUUCGUUCUUGG___GCAGCAGCAUAGGCAGAAGUGCUUGGCUGCUGCAGCAGA_____AGGCAC
(((((((((..............)))))))))..............(((((.((.(((((......))))))).)))))................. (-16.62 = -14.99 +  -1.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:18 2006