Locus 1428

Sequence ID 3R_DroMel_CAF1
Location 4,136,752 – 4,136,847
Length 95
Max. P 0.782959
window2377

overview

Window 7

Location 4,136,752 – 4,136,847
Length 95
Sequences 4
Columns 95
Reading direction reverse
Mean pairwise identity 90.18
Mean single sequence MFE -30.01
Consensus MFE -24.02
Energy contribution -24.52
Covariance contribution 0.50
Combinations/Pair 1.09
Mean z-score -1.82
Structure conservation index 0.80
SVM decision value 0.56
SVM RNA-class probability 0.782959
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4136752 95 - 27905053
GGGGCGUAUACUCAACACACCUCGCUAAGCUUCCGAACACUCCUCCGUGUUCACACGCGGAUCUGCGAGGAAGCGAACAAUCAUCGGACUUCAUC
((((.((.........)).)))).....((((((((((((......))))))...((((....)))).))))))..................... ( -28.50)
>DroSec_CAF1 3569 95 - 1
GGGGCAUGCACUCAACACACCUCGCUAAGCUUCCGAACACUCCUCCGUGUUCACACGCGGAUCUGCGAGGAAGCGAACAAUCAUCGGACUCCAUC
(((((..((..............))...((((((((((((......))))))...((((....)))).))))))............).))))... ( -27.94)
>DroEre_CAF1 4002 95 - 1
GGGGCGUAUACUCAACGCAGCCCGGUAAACUUCCGAACACUCCUCCGUGUUCACGCGCGGAUUUGCGAGGAAGCGAACAAUCAUCGGACACCGUG
(((((((.......))))..)))(((...(((((((((((......)))))).((((......)))).)))))(((.......)))...)))... ( -30.50)
>DroYak_CAF1 7352 95 - 1
GGGGCGUAUACUCAACGCGCCCCGCUAAACUUCCGAACACUCCUCCGUGUUCACACGCGGAUUUGCGAGGAAGCGAACAAUCAUCGCUCACCAUC
(((((((.........))))))).......((((((((((......))))))...((((....)))).))))((((.......))))........ ( -33.10)
>consensus
GGGGCGUAUACUCAACACACCCCGCUAAACUUCCGAACACUCCUCCGUGUUCACACGCGGAUCUGCGAGGAAGCGAACAAUCAUCGGACACCAUC
((((.((.........)).)))).....((((((((((((......))))))...((((....)))).))))))..................... (-24.02 = -24.52 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:16 2006