Locus 1427

Sequence ID 3R_DroMel_CAF1
Location 4,132,576 – 4,132,667
Length 91
Max. P 0.718031
window2376

overview

Window 6

Location 4,132,576 – 4,132,667
Length 91
Sequences 3
Columns 96
Reading direction forward
Mean pairwise identity 69.61
Mean single sequence MFE -30.93
Consensus MFE -16.90
Energy contribution -17.93
Covariance contribution 1.04
Combinations/Pair 1.19
Mean z-score -1.64
Structure conservation index 0.55
SVM decision value 0.39
SVM RNA-class probability 0.718031
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4132576 91 + 27905053
UGGACGGCAUACAAAUGGCGAUGCUGCGAUGCGAGUGAUGAUACAAACGACGUGUUAGCUUGCUUGUUUGUUUGUCACUUGCGCCGCGU-----GC
....((.(((....))).))..((((((.(((((((((..(.((((((((.(((......))))))))))))..))))))))).)))).-----)) ( -35.10)
>DroSim_CAF1 3324 91 + 1
UGGACGGCAUACAAAUGGCGAUGCUGCGAUGCGAGUGAUGCUACACACGCCGUGUUAGCUCGCUUGUUUGUUUGCCACUUGCGCCGCGU-----GC
..(.((((...(((.((((((....((((.((((((((.(((((((.....))).)))))))))))))))))))))).))).)))))..-----.. ( -35.20)
>DroYak_CAF1 2954 81 + 1
UGGAGGGCAAACAAAUGGCUUCUUUGGGACGAGAGUGA---UACACAUGCC------------CAGUUUGUUUGUCACUUGCGAUGGUUCGGCGAU
..(((((((((((((((((.....((..((....))..---)).....)))------------..))))))))))).))).(((....)))..... ( -22.50)
>consensus
UGGACGGCAUACAAAUGGCGAUGCUGCGAUGCGAGUGAUG_UACACACGCCGUGUUAGCU_GCUUGUUUGUUUGUCACUUGCGCCGCGU_____GC
....((.(((....))).)).....(((.((((((((((...(((.((...(((......)))..)).)))..)))))))))).)))......... (-16.90 = -17.93 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:15 2006