| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,131,443 – 4,131,545 |
| Length | 102 |
| Max. P | 0.815302 |
| Location | 4,131,443 – 4,131,545 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 82.74 |
| Mean single sequence MFE | -28.06 |
| Consensus MFE | -20.65 |
| Energy contribution | -20.76 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.815302 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4131443 102 + 27905053 CUUUGGGGAAAAAACAGCAGUCGAAAGCGCAUAAGUCCCGACGACAGCAAACAUAAAUUCCAGUCGUCUGGAU-CCAC-CCCCCUAAAGAAAUCCGCAUA--------------GUCA ((((((((........((.(.(....))))....((((.((((((.................)))))).))))-....-..))))))))...........--------------.... ( -27.23) >DroSim_CAF1 1637 101 + 1 CUCUGGGGAA--AACAGCAGUCGAAAGCGCAUAAGUCCCGACGACAGCCAACAUAAAUUCCAGUCGUCCGGCU-CCACGCCCCCCAAAGAAAUCCGCAUC--------------GUCA ((.(((((..--....((.(.(....))))...((.((.((((((.................)))))).))))-.......))))).))...........--------------.... ( -23.93) >DroYak_CAF1 1701 115 + 1 CUCUGGGGAA--AAGAGCAGUCGAAAGCGCAUAAGUCCGGACGACAGCCAACAUAAAUUCCAGUCAUCCGGCUGCCAC-UCCCCCAAAGAAAUCCGCAUCUACAUCGAUGCGCCAUCA ((.(((((..--....((.(.(....))))...((.(((((.(((.................))).))))))).....-..))))).)).....((((((......))))))...... ( -33.03) >consensus CUCUGGGGAA__AACAGCAGUCGAAAGCGCAUAAGUCCCGACGACAGCCAACAUAAAUUCCAGUCGUCCGGCU_CCAC_CCCCCCAAAGAAAUCCGCAUC______________GUCA ((.(((((........((.(.(....))))......((.((((((.................)))))).))..........))))).))............................. (-20.65 = -20.76 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:14 2006