Locus 1423

Sequence ID 3R_DroMel_CAF1
Location 4,125,264 – 4,125,384
Length 120
Max. P 0.665279
window2370

overview

Window 0

Location 4,125,264 – 4,125,384
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.17
Mean single sequence MFE -43.22
Consensus MFE -24.26
Energy contribution -23.30
Covariance contribution -0.96
Combinations/Pair 1.50
Mean z-score -1.76
Structure conservation index 0.56
SVM decision value 0.28
SVM RNA-class probability 0.665279
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4125264 120 + 27905053
AAAGCGUACGUGCGAGUCAGCUCAUCCAUGGCUUCAAUUGCCGAGUUGAGGCGAGUUUUCAGCGGUUCGAUGGUGCCCCGAUCCGCCCGAUAGGGCUGGCACUUGGAGCAAGAGUGCUUA
.(((((..((((.(((....)))...))))(((((((.(((((.(((((((.....)))))))((.(((.........))).))((((....))))))))).))))))).....))))). ( -43.50)
>DroVir_CAF1 21980 120 + 1
AAUGCGUAGGUGCGAGUGAGCUGAUCCAUGGCCUCAAUGGCAGUGUUAAGACGAUUCUUGAGCGGCUCAAUUGUGCCACGAUCUGCCCGGUACGGCUGGCAGAAAUAACAGCUAUGCUUC
...(((((((..(((.(((((((...(((.(((.....))).)))((((((....)))))).))))))).)))..))....((((((.((.....)))))))).........)))))... ( -45.20)
>DroPse_CAF1 30176 120 + 1
AGCGCAUACGUGCGUGUCAGUUCGUCCAUGGCCUCAAUGGCUGAGUUUAAGCGAGUCUUUAGCGGCUCAAUGGUGCCUCGAUCGGCACGAUACGGCUGACAGAAGAAGCACGUGUGCUUU
...((((((((((.(((((((.(((.(((((((.....))))..........(((((......))))).)))(((((......)))))...))))))))))......))))))))))... ( -49.80)
>DroGri_CAF1 33944 120 + 1
AUAGCACAGGUGCGUGUGAUCUGAUCCAUCGCUUCAAUGGCCGAAUUGAGCCGAGUCUUGAGCGGCUCAAUUGUGCCGCGAUCUGCUCGAUAGGGAUGACAGAAAUAGCAACUAUGCUUG
..((((.((.(((.(((..((((...((((.((((...(((..((((((((((.........))))))))))..)))((.....))..)).)).)))).)))).)))))).)).)))).. ( -40.90)
>DroWil_CAF1 18679 120 + 1
AAAGCAUAGGUGUGAUUUAGUUCAUCCAUGGCCUCGAUGGCUGAGUUUAGACGUAUCUUAAGCGGCUCAAUUGUUCCUCUAUCUGCUCGAUAAGGCUGACAGAAGAAGCAACUAUGUUUU
(((((((((((.(((((((((.((((.........)))))))))).))).))((.((((...(((((..((((..(........)..))))..)))))....)))).))..))))))))) ( -30.10)
>DroPer_CAF1 30179 120 + 1
AGCGCAUACGUGCGUGUCAGUUCGUCCAUGGCCUCAAUGGCUGAGUUUAAGCGAGUCUUUAGCGGCUCAAUGGUGCCUCGAUCGGCACGAUACGGCUGACAGAAGAAGCACGUGUGCUUU
...((((((((((.(((((((.(((.(((((((.....))))..........(((((......))))).)))(((((......)))))...))))))))))......))))))))))... ( -49.80)
>consensus
AAAGCAUACGUGCGAGUCAGCUCAUCCAUGGCCUCAAUGGCUGAGUUUAGGCGAGUCUUGAGCGGCUCAAUGGUGCCUCGAUCUGCACGAUACGGCUGACAGAAGAAGCAACUAUGCUUU
...((((((.(((..(((((((.(((..(((((.....)))))..................(.(((........))).).........)))..))))))).......))).))))))... (-24.26 = -23.30 +  -0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:09 2006