Locus 1422

Sequence ID 3R_DroMel_CAF1
Location 4,118,095 – 4,118,202
Length 107
Max. P 0.748036
window2369

overview

Window 9

Location 4,118,095 – 4,118,202
Length 107
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 81.25
Mean single sequence MFE -36.78
Consensus MFE -23.08
Energy contribution -23.88
Covariance contribution 0.81
Combinations/Pair 1.12
Mean z-score -2.05
Structure conservation index 0.63
SVM decision value 0.47
SVM RNA-class probability 0.748036
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4118095 107 - 27905053
CAGACAACUGCAAGUCCACCUGUUGCUUCUGCAGCAGAGUCUCCAGUUCCUGGUUGGCUUCACCAAAAGCGAAGAGCAGCACACAGCCCAGCAGAAGCA---AUGCUUUU
..(((........))).....(((((((((((.((.(((((.((((...))))..)))))........((.....))........))...)))))))))---))...... ( -30.50)
>DroPse_CAF1 23360 110 - 1
UGGACAGCUGCAAGUCCUUCUGCUGCUGCAUUAGCAGGUUGUCCAGCUCCUGGUGGCCACUCGCGUAGGCACUCAGGAGCACACAGCUAAGCAAGAGCAGAGAUACUUUA
.((((........))))(((((((..(((.(((((.((....)).((((((((((.((((....)).))))).))))))).....))))))))..)))))))........ ( -46.30)
>DroSec_CAF1 16910 107 - 1
CAGACAACUGCAAGUCCACCUGUUGCUUCUGCAGCAGAGUCUCCAGUUCCUGGUGGGCUUCACCAAAAGCGAAGAGCAGCACACAGCCCAGCAGAAGCA---AUGCUUUU
..(((........))).....(((((((((((..........((((...))))((((((.........((.....)).......)))))))))))))))---))...... ( -32.49)
>DroSim_CAF1 14210 107 - 1
CAGACAACUGCAAGUCCACCUGUUGCUUCUGCAGCAGAGUCUCCAGUUCCUGGUGGGCUUCACCAAAAGCGAAGAGCAGCACACAGCCCAGCAGAAGCA---AUGCUUUU
..(((........))).....(((((((((((..........((((...))))((((((.........((.....)).......)))))))))))))))---))...... ( -32.49)
>DroEre_CAF1 19150 107 - 1
CAGACAACUGCAAGUCCACCUGCUGCUUCUGCAGCAGAUUCUCCAGUUCCUGGUGGGCUUCACCAAAGGCGAAGAGCAGCACACAGGCCAGCAGAAGCA---AUGCUUUU
.......(((((((((((((((((((....)))))))......(((...))))))))))).......(((................))).))))((((.---..)))).. ( -34.19)
>DroPer_CAF1 23315 110 - 1
UGGACAGCUGCAAGUCCUUCUGCUGCUGCAUUAGCAGGUUGUCCAGCUCCUGGUGGCCACUCGCGUAGGCACUCAGGAGCACACAGCUCAGCAAGAGCAGAGAUACUUUA
((((((((.(((........)))..((((....))))))))))))((((((((((.((((....)).))))).))))))).....((((.....))))............ ( -44.70)
>consensus
CAGACAACUGCAAGUCCACCUGCUGCUUCUGCAGCAGAGUCUCCAGUUCCUGGUGGGCUUCACCAAAAGCGAAGAGCAGCACACAGCCCAGCAGAAGCA___AUGCUUUU
.......((((..((((..(((((((....))))))).....((((...)))).))))..........((........))..........))))(((((....))))).. (-23.08 = -23.88 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:08 2006