Locus 1414

Sequence ID 3R_DroMel_CAF1
Location 4,098,319 – 4,098,439
Length 120
Max. P 0.976349
window2349

overview

Window 9

Location 4,098,319 – 4,098,439
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.33
Mean single sequence MFE -35.30
Consensus MFE -31.68
Energy contribution -31.32
Covariance contribution -0.36
Combinations/Pair 1.09
Mean z-score -1.67
Structure conservation index 0.90
SVM decision value 1.77
SVM RNA-class probability 0.976349
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4098319 120 + 27905053
GCACGCGUGUCAUCCCGGGCAGCAAUCAAAGUGAUAUGAAAAUUGCAUUUGGGUUCAACAGGUUCGCAGUUUUCGAUUGCUGAUCGCUGUGGCCAAUGCACCUUAAAAAAAUAUGUAUAC
....(((((((((..((..((((((((..(....)..((((((((((((((.......)))))..)))))))))))))))))..))..)))))..))))..................... ( -35.20)
>DroSec_CAF1 10228 120 + 1
GCACGCGUGUCAUCCCGGGCAGCAAUCAAAGUGAUAUGAAAAUUGCAUUUGGGUUCAACAGGUUCGCAGUUUUCGAUUGCUGAUCGCUGUGGCCAAUGCACCUUAAAAAAUAUUGAAUAC
....(((((((((..((..((((((((..(....)..((((((((((((((.......)))))..)))))))))))))))))..))..)))))..))))..................... ( -35.20)
>DroSim_CAF1 10274 120 + 1
GCACGCGUGUCAUCCCGGGCAGCAAUCAAAGUGAUAUGAAAAUUGCAUUUGGGUUCAACAGGUUCGCAGUUUUCGAUUGCUGAUCGCUGUGGCCAAUGCACCUUAAAAAAUAUUGAAUAG
....(((((((((..((..((((((((..(....)..((((((((((((((.......)))))..)))))))))))))))))..))..)))))..))))..................... ( -35.20)
>DroEre_CAF1 10298 120 + 1
GCACGCGUGUCAUCCUGGGCAGCAAUCAAAGUGAUAUGAAAAUUGCAUUUGGGUUCAACAGGUUCGCAGUUUUCGAUUGCUGAUCGCUGAGGCUAGUGCACGGUAAAAAAAUAUGAACAC
((((..((.(((...((..((((((((..(....)..((((((((((((((.......)))))..)))))))))))))))))..)).))).))..))))..................... ( -34.80)
>DroYak_CAF1 10259 120 + 1
GCACGCGUGUCAUCCCGGGCAGCAAUCAAAGUGAUAUGAAAAUUGCAUUUGGGUUCAACAGGUUCGCAGUUUUCGAUUGUUGAUCGCUGUGGCUAGUGCACGGUAAAAAAAUAUGAACAC
((((....(((((..((..((((((((..(....)..((((((((((((((.......)))))..)))))))))))))))))..))..)))))..))))..................... ( -36.10)
>consensus
GCACGCGUGUCAUCCCGGGCAGCAAUCAAAGUGAUAUGAAAAUUGCAUUUGGGUUCAACAGGUUCGCAGUUUUCGAUUGCUGAUCGCUGUGGCCAAUGCACCUUAAAAAAAUAUGAAUAC
....(((((((((..((..((((((((..(......)((((((((((((((.......)))))..)))))))))))))))))..))..)))))..))))..................... (-31.68 = -31.32 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:49 2006