| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,097,762 – 4,097,864 |
| Length | 102 |
| Max. P | 0.987091 |
| Location | 4,097,762 – 4,097,864 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 81.56 |
| Mean single sequence MFE | -13.30 |
| Consensus MFE | -13.30 |
| Energy contribution | -13.30 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.74 |
| Structure conservation index | 1.00 |
| SVM decision value | 2.07 |
| SVM RNA-class probability | 0.987091 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4097762 102 - 27905053 CCAAAUCCAAACCCAAAUCCAAUCCCAAUCCCAAUCCCAAUUUCAAUUUCUAUCCCAAUGCAGUAGUGCGACUGUCAACGAACACCGAUCGUGGGUAAUUGA ..........................................((((((.....(((...(((((......)))))..((((.......))))))).)))))) ( -13.30) >DroSec_CAF1 9712 78 - 1 CCAA------------------------ACCCAAUCCCAAUUUCAAUUUCUAUCCCAUUGCAGUAGUGCGACUGUCAACGAACACCGAUCGUGGGUAAUUGA ....------------------------..............((((((.....(((...(((((......)))))..((((.......))))))).)))))) ( -13.30) >DroSim_CAF1 9744 78 - 1 CCAA------------------------ACCCAAUCCCAAUUUCAAUUUCUAUCCCAAUGCAGUAGUGCGACUGUCAACGAACACCGAUCGUGGGUAAUUGA ....------------------------..............((((((.....(((...(((((......)))))..((((.......))))))).)))))) ( -13.30) >consensus CCAA________________________ACCCAAUCCCAAUUUCAAUUUCUAUCCCAAUGCAGUAGUGCGACUGUCAACGAACACCGAUCGUGGGUAAUUGA ..........................................((((((.....(((...(((((......)))))..((((.......))))))).)))))) (-13.30 = -13.30 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:48 2006