| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,096,151 – 4,096,269 |
| Length | 118 |
| Max. P | 0.996873 |
| Location | 4,096,151 – 4,096,269 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 94.29 |
| Mean single sequence MFE | -31.10 |
| Consensus MFE | -23.06 |
| Energy contribution | -23.86 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.83 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.860291 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4096151 118 + 27905053 GAAAGAGGAGAGCACAACGUUUUUGGACGCGUGUGGCCAAAGUUAAUGAAGCGUUUAAGAAUUAACUUGUGGCCAAACGGAG-AA-AAAAAGGCCCGAACAGUUAGGGGCGAGAAUGAGA .................(((((((.....(((.((((((((((((((....(......).)))))))).)))))).)))...-..-......((((..........)))))))))))... ( -31.30) >DroSec_CAF1 8084 118 + 1 GAAAGAGGAGAGCACAACGUUUUUGGACGCGUGUGGCCAAAGUUAAUGAAGCGUUUAAAAAUUAACUUGUGGCCAAACGGAGGAA-AAAAAGGCCCGAACAGUUAG-GGCGAGAAUGAGA .................(((((((.....(((.((((((((((((((.............)))))))).)))))).)))......-......((((.........)-))))))))))... ( -31.62) >DroSim_CAF1 8116 118 + 1 GAAAGAGGAGAGCACAACGUUUUUGGACGCGUGUGGCCAAAGUUAAUGAAGCGUUUAAAAAUUAACUUGUGGCCAAACGGAGGAA-AAAAAGGCCCGAACAGUUAG-GGCGAGAAUGAGA .................(((((((.....(((.((((((((((((((.............)))))))).)))))).)))......-......((((.........)-))))))))))... ( -31.62) >DroEre_CAF1 8122 119 + 1 GAAAGAGGAGAACACAACGUUUUUGGACGCGUGUGGCCAAAGUUAAUGAAGCGUUUUAAAAUUAACUUGUGGCCAAACGGAGGAGCAAAAAAACCUGAACAGUUAG-GGCGAGAAUGAGG .................((((((((....(((.((((((((((((((.............)))))))).)))))).)))..............(((((....))))-).))))))))... ( -30.72) >DroYak_CAF1 8069 117 + 1 GAAAGAGGAGAGCACAACUUUUUUGGACGCGUGUGGCCAAAGUUAAUGAAGCGUUUAAAAAUUAACUUGUGGCCAAACGGAGGAAAAAAAAACCCUGAACAGUUAG-GG--AGAAUGAGG (((((((..........))))))).....(((.((((((((((((((.............)))))))).)))))).))).............((((((....))))-))--......... ( -30.22) >consensus GAAAGAGGAGAGCACAACGUUUUUGGACGCGUGUGGCCAAAGUUAAUGAAGCGUUUAAAAAUUAACUUGUGGCCAAACGGAGGAA_AAAAAGGCCCGAACAGUUAG_GGCGAGAAUGAGA .................(((((((.....(((.((((((((((((((.............)))))))).)))))).))).............(((............))))))))))... (-23.06 = -23.86 + 0.80)
| Location | 4,096,151 – 4,096,269 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 94.29 |
| Mean single sequence MFE | -24.20 |
| Consensus MFE | -19.94 |
| Energy contribution | -19.54 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.86 |
| Structure conservation index | 0.82 |
| SVM decision value | 2.76 |
| SVM RNA-class probability | 0.996873 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4096151 118 - 27905053 UCUCAUUCUCGCCCCUAACUGUUCGGGCCUUUUU-UU-CUCCGUUUGGCCACAAGUUAAUUCUUAAACGCUUCAUUAACUUUGGCCACACGCGUCCAAAAACGUUGUGCUCUCCUCUUUC ..........((((..........))))......-..-.......((((((.((((((((.............))))))))))))))(((((((......))).))))............ ( -24.42) >DroSec_CAF1 8084 118 - 1 UCUCAUUCUCGCC-CUAACUGUUCGGGCCUUUUU-UUCCUCCGUUUGGCCACAAGUUAAUUUUUAAACGCUUCAUUAACUUUGGCCACACGCGUCCAAAAACGUUGUGCUCUCCUCUUUC ..........(((-(.........))))......-..........((((((.((((((((.............))))))))))))))(((((((......))).))))............ ( -25.02) >DroSim_CAF1 8116 118 - 1 UCUCAUUCUCGCC-CUAACUGUUCGGGCCUUUUU-UUCCUCCGUUUGGCCACAAGUUAAUUUUUAAACGCUUCAUUAACUUUGGCCACACGCGUCCAAAAACGUUGUGCUCUCCUCUUUC ..........(((-(.........))))......-..........((((((.((((((((.............))))))))))))))(((((((......))).))))............ ( -25.02) >DroEre_CAF1 8122 119 - 1 CCUCAUUCUCGCC-CUAACUGUUCAGGUUUUUUUGCUCCUCCGUUUGGCCACAAGUUAAUUUUAAAACGCUUCAUUAACUUUGGCCACACGCGUCCAAAAACGUUGUGUUCUCCUCUUUC ...(((...((.(-((........)))..((((((..(...(((.((((((.((((((((.............)))))))))))))).))).)..))))))))..)))............ ( -22.22) >DroYak_CAF1 8069 117 - 1 CCUCAUUCU--CC-CUAACUGUUCAGGGUUUUUUUUUCCUCCGUUUGGCCACAAGUUAAUUUUUAAACGCUUCAUUAACUUUGGCCACACGCGUCCAAAAAAGUUGUGCUCUCCUCUUUC .........--..-..........(((((.(((((((...((((.((((((.((((((((.............)))))))))))))).))).)...)))))))....)))))........ ( -24.32) >consensus UCUCAUUCUCGCC_CUAACUGUUCGGGCCUUUUU_UUCCUCCGUUUGGCCACAAGUUAAUUUUUAAACGCUUCAUUAACUUUGGCCACACGCGUCCAAAAACGUUGUGCUCUCCUCUUUC ........................(((..............(((.((((((.((((((((.............)))))))))))))).))).(..(((.....)))..)...)))..... (-19.94 = -19.54 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:34 2006