Locus 1403

Sequence ID 3R_DroMel_CAF1
Location 4,092,554 – 4,092,674
Length 120
Max. P 0.542103
window2317

overview

Window 7

Location 4,092,554 – 4,092,674
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 97.58
Mean single sequence MFE -34.14
Consensus MFE -31.18
Energy contribution -31.42
Covariance contribution 0.24
Combinations/Pair 1.03
Mean z-score -1.22
Structure conservation index 0.91
SVM decision value 0.02
SVM RNA-class probability 0.542103
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4092554 120 + 27905053
ACGACCAGGAUCGUACCUCUAUUCACGAAGCCAUGGAGCAGCAGUCUAUUUCGAUUUCCAAGGCUGGUAUUGUCACCUCUCUUCAAGCUCGUUGCACCGUGAUUGCUGCUGCCAAUCCCA
.......(((((((..........)))).....(((((((((((((.....((......((((..(((......)))..))))...((.....))..)).)))))))))).))).))).. ( -30.30)
>DroSec_CAF1 4468 120 + 1
ACGACCAGGAUCGUACCUCUAUUCACGAGGCCAUGGAGCAGCAGUCCAUUUCGAUUUCGAAGGCUGGUAUUGUCACCUCUCUUCAAGCUCGUUGCACCGUGAUUGCUGCUGCCAAUCCCA
.......((((....((((.......))))...((((((((((((((...........(((((..(((......)))..)))))..((.....))...).)))))))))).))))))).. ( -38.50)
>DroSim_CAF1 4514 120 + 1
ACGACCAGGAUCGUACCUCUAUUCACGAGGCCAUGGAGCAGCAGUCCAUUUCGAUUUCGAAGGCUGGUAUUGUCACCUCUCUUCAAGCUCGUUGCACCGUGAUUGCUGCUGCCAAUCCCA
.......((((....((((.......))))...((((((((((((((...........(((((..(((......)))..)))))..((.....))...).)))))))))).))))))).. ( -38.50)
>DroEre_CAF1 4523 120 + 1
ACGACCAGGAUCGUACCUCUAUUCACGAGGCCAUGGAACAGCAGUCCAUAUCGAUUUCCAAGGCUGGUAUUGUCACCUCUCUUCAAGCUCGUUGCACCGUGAUUGCUGCUGCCAAUCCCA
.......((((....((((.......))))...(((..(((((((((............((((..(((......)))..))))...((.....))...).))))))))...))))))).. ( -28.70)
>DroYak_CAF1 4456 120 + 1
ACGACCAGGAUCGUACCUCUAUUCACGAGGCCAUGGAGCAGCAAUCGAUUUCGAUUUCCAAGGCUGGUAUUGUCACCUCUCUUCAAGCUCGUUGCACCGUGAUUGCUGCUGCCAAUCCCA
.......((((....((((.......))))...((((((((((((((....(((.((..((((..(((......)))..))))..)).)))........))))))))))).))))))).. ( -34.70)
>consensus
ACGACCAGGAUCGUACCUCUAUUCACGAGGCCAUGGAGCAGCAGUCCAUUUCGAUUUCCAAGGCUGGUAUUGUCACCUCUCUUCAAGCUCGUUGCACCGUGAUUGCUGCUGCCAAUCCCA
.......((((....((((.......))))...(((((((((((((.............((((..(((......)))..))))...((.....)).....)))))))))).))))))).. (-31.18 = -31.42 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:18 2006