Locus 1402

Sequence ID 3R_DroMel_CAF1
Location 4,092,394 – 4,092,514
Length 120
Max. P 0.691430
window2316

overview

Window 6

Location 4,092,394 – 4,092,514
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 92.78
Mean single sequence MFE -42.73
Consensus MFE -36.96
Energy contribution -38.03
Covariance contribution 1.06
Combinations/Pair 1.03
Mean z-score -1.59
Structure conservation index 0.87
SVM decision value 0.33
SVM RNA-class probability 0.691430
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4092394 120 - 27905053
AGCCAGAACCAGAGCACCCGCUUCCAAUGUCCACUCCCGAGAUACUGGAUUGCGGCGCACAUAAGCCGUGAGACCCACGGCACUGGCUCCCUGCCCAGUCGUGAAAACCGCACGUGGCGC
((((((.......((..((((.((((.(((((......).)))).))))..)))).))......((((((.....)))))).))))))....(((....((((.......)))).))).. ( -45.40)
>DroSec_CAF1 4308 120 - 1
AGCCAGAACCAGAGCACCCGCUUCCAAUGUCCACUCCCGGGAUACUGGAUUGCGGCGCACAUAAGCCGUGAGACCGACGGCACUGGCUCCCUGCCCAGUCGUGAAAACCGCACGUGGCGC
((((((.......((..((((.((((.(((((.......))))).))))..)))).))......(((((.......))))).))))))....(((....((((.......)))).))).. ( -45.40)
>DroEre_CAF1 4363 120 - 1
AGCCAGCACCAGAGCACCCGCCUCCAAUGUCCACUCACGGGAUACUGGAUUUCGGCGCACAUAAGCCGUAAGACCCACUGCACUGGCUCCCUGUCCGGUAGUGAAAACUGCACGAGGCGC
((((((...(((..........((((.(((((.......))))).))))...((((........)))).........)))..))))))....((((((((((....))))).)).))).. ( -40.00)
>DroYak_CAF1 4296 120 - 1
AGCCAGCACCAGAGCACCCGCCUCCAAUGUCCACUCCCGGGAUACUGGAUUUCGUCGCACAUAAGCCGUAAGACCAACGGCACUGGCUCCCUGCCCCGUAGUGAAAACUGCACGUGGCGC
.(((((((((((.((...((..((((.(((((.......))))).))))...))..))......(((((.......))))).)))).....)))...(((((....)))))...)))).. ( -40.10)
>consensus
AGCCAGAACCAGAGCACCCGCCUCCAAUGUCCACUCCCGGGAUACUGGAUUGCGGCGCACAUAAGCCGUAAGACCCACGGCACUGGCUCCCUGCCCAGUAGUGAAAACCGCACGUGGCGC
((((((.......((.((....((((.(((((.......))))).))))....)).))......(((((.......))))).))))))....(((..(((((....)))))....))).. (-36.96 = -38.03 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:17 2006