| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 164,797 – 164,917 |
| Length | 120 |
| Max. P | 0.785668 |
| Location | 164,797 – 164,917 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.56 |
| Mean single sequence MFE | -47.77 |
| Consensus MFE | -25.29 |
| Energy contribution | -26.10 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.785668 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 164797 120 + 27905053 ACUAGCUUCUGGCUCUGGCUACUUACUACCUUGGGCACCGGUUUCGCACUGCUGGCCUGCGCUGUGGCUGCCAUCGCCGCUGUCCUAAAGUCAGCCUCUGCGGCCAAAAAAGGAGGCACA ....((((((.((((.((..........))..))))...(((..((((..((((((..(.((.(((((.......))))).)).)....))))))...)))))))......))))))... ( -39.60) >DroVir_CAF1 726 120 + 1 ACCAGCUUCUGGCUAUGGCUGCUCACCACACUUGGCACUGGGUUCGGGCUGUUGUCGUGCGCCAUAGCAGCCAUAGCCGCUGUGUUUAAAUCAGCGUCAGCAGCCAAAAAAGGCGGCACC ....(((...((((((((((((((((.(((..((((.(((....))))))).))).)))......)))))))))))))((((((((......)))).)))).(((......))))))... ( -49.50) >DroGri_CAF1 314 120 + 1 ACCAGCUUCUGGCUAUGGCUGCUCACCACACUUGGCACUGGAUUUGGAUUGUUGGCGUGUGCCGUUGCUGCCAUAGCUGCUGUGCUCAAGUCGGCUUCGGCUGCUAAGAAAAACGGCACC ..........(((((((((.((....((((((..(((((......))..)))..).))))).....)).)))))))))(((((.((..((.((((....)))))).))....)))))... ( -43.80) >DroWil_CAF1 463 120 + 1 ACGAGCUUUUGGCUUUGGCUGCUCACCACCCUGGGCACAGGUUUUGGUCUUUUGGCCUGUGCCGUGGCUGCCAUAGCCUCUGUUUUAAAGGCUGCUUCGGCGGCCAAGCGCGGUGGCACU .((.((((..((((.((((.((.((((.....)((((((((((..........))))))))))))))).)))).))))...........((((((....)))))))))).))........ ( -56.60) >DroMoj_CAF1 322 120 + 1 ACUAGCUUUUGGCUGUGGUUGCUUACGACACUUGGCACAGGCUUUGGACUGUUGGCGUGCACUAUAGCUGCCAUAGCCGCUGUGCUGAAGUCAGCGUCAGCAGCUAAGAAAGGCGGCACC ....(((((((((((((((.(((.....(((..(.(((((........))).)).))))......))).)))))))))(((((((((....))))).)))).......))))))...... ( -46.80) >DroAna_CAF1 524 120 + 1 ACUAGCUUUUGGCUAUGGCUCCUCACCACUCUUGGCACCGGGUUUGGUCUUCUGGCCUGCGCGGUGGCUGCCAUUGCUGCCGUGCUAAAAUCCGCCUCAGGAGCCAAGAAGGGCGGCACU ....(((((...((.((((((((..(((....)))...(((((((((((....)))).((((((..((.......))..))))))..)))))))....)))))))))).)))))...... ( -50.30) >consensus ACUAGCUUCUGGCUAUGGCUGCUCACCACACUUGGCACAGGGUUUGGACUGUUGGCCUGCGCCGUGGCUGCCAUAGCCGCUGUGCUAAAGUCAGCCUCAGCAGCCAAGAAAGGCGGCACC ..........(((((((((.(((.........((.((.(((.......))).)).))........))).)))))))))((((.........))))....((.(((......))).))... (-25.29 = -26.10 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:14 2006