Locus 1394

Sequence ID 3R_DroMel_CAF1
Location 4,075,243 – 4,075,363
Length 120
Max. P 0.931290
window2296

overview

Window 6

Location 4,075,243 – 4,075,363
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 75.97
Mean single sequence MFE -36.32
Consensus MFE -21.31
Energy contribution -23.88
Covariance contribution 2.56
Combinations/Pair 1.29
Mean z-score -2.13
Structure conservation index 0.59
SVM decision value 1.21
SVM RNA-class probability 0.931290
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4075243 120 + 27905053
UACAUGGUGGUCUUUCACGAUGUGAUUUACGACACCGAAAUUGAUGGGAUGCUAAACUCGAGUAAUUUCGGAUUAUCCCUUACUGAUUCAGGCCAGAAGUCUGAGGUGAGAACGUCCAAG
(((((.((((....)))).)))))......(((.(((((((((.((((........))))..))))))))).......((((((...((((((.....))))))))))))...))).... ( -35.90)
>DroAna_CAF1 9315 120 + 1
UACAUGGUGGUCUACCAUGAUGUGAUCUACGAGAACGAGAUAAAUUGGUUGCUGGACAACAGCGAUUUCAGAACGUCCCUGGUGGGCGAAAGUCAGAUCUCAACACUAAGAACUUCUCAG
(((((.((((....)))).)))))......(((((.(((((.....((((((((.....))))))))......((.(((....)))))........)))))..(.....)...))))).. ( -34.40)
>DroEre_CAF1 3666 120 + 1
UACAUGGUGGUCUACCACGAUGUGAUUUACGACAGCGAAAUUGAUUUGAUGCUAAACGCAAGUAAUUUCUCAUUAUCCCUGACUAAUUCGGGUCAGAAGUCAGAGGUGAGAGCUUCGAAG
(((((.((((....)))).)))))......(((.(.((((((.(((((.((.....))))))))))))).).......((((((......))))))..))).(((((....))))).... ( -36.40)
>DroYak_CAF1 802 120 + 1
UACAUGGUGGUCUUUCACGAUGUGAUUUACGACAGAGAAAUUGAAUUGAUGCUAAACUCAAGUAAUUUCAUAUUAUCCCUGACUGAUUCGGGUCAGGAGUCGGAGGUGAGAGCUUCAAAG
(((((.((((....)))).))))).....((((...(((((((..((((........)))).)))))))........(((((((......))))))).))))(((((....))))).... ( -38.60)
>consensus
UACAUGGUGGUCUACCACGAUGUGAUUUACGACAGCGAAAUUGAUUGGAUGCUAAACUCAAGUAAUUUCAGAUUAUCCCUGACUGAUUCAGGUCAGAAGUCAGAGGUGAGAACUUCAAAG
(((((.((((....)))).)))))......(((...((((((.((((((........)))))))))))).........((((((......))))))..))).(((((....))))).... (-21.31 = -23.88 +   2.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:57 2006