Locus 1393

Sequence ID 3R_DroMel_CAF1
Location 4,070,761 – 4,070,881
Length 120
Max. P 0.730549
window2295

overview

Window 5

Location 4,070,761 – 4,070,881
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 91.81
Mean single sequence MFE -39.38
Consensus MFE -34.14
Energy contribution -34.82
Covariance contribution 0.69
Combinations/Pair 1.14
Mean z-score -1.60
Structure conservation index 0.87
SVM decision value 0.42
SVM RNA-class probability 0.730549
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4070761 120 - 27905053
UUGACGGUCAAGUCGAAAAAUGAGUCCGGCAGGUCAUUCGCAUUUUUCUUGGAUUCGUCCAAGGAAAAGAGUACAGCCUGGCGUGGCCCAAUUAUUUUCACCACUGGUGGAGCCCUGCCU
(((((......)))))...........((((((.(....((.(((((((((((....)))))))))))..))...(((......))).........((((((...))))))).)))))). ( -38.60)
>DroSec_CAF1 7704 120 - 1
UUGACGGUCAAGUCGAAAAAUGAGUCCGGCAGGUCAUUCGCAUUUUUCUUGGAUUCGUCCAAGGAAAAUAGUACAGCCUGGCGUGGCCCAAUUAUUUUCACCACUGGUGGAGGCUUGUCU
.....((.((((((......((.(((((.(((((....(..((((((((((((....)))))))))))).)....))))).)).))).))......((((((...)))))))))))).)) ( -43.30)
>DroSim_CAF1 8242 120 - 1
UUGACGGUCAAGUCGAAAAAUGAGUCCGGCAGGUCAUUCGCAUUUUUCUUGGAUUCGUCCAAGGAAAAUAGUACAGCCUGGCGUGGCCCAAUUAUUUUCACCUCUGGUGGAGCCUUGCCU
.....((.((((.(......((.(((((.(((((....(..((((((((((((....)))))))))))).)....))))).)).))).))......((((((...))))))).)))))). ( -40.70)
>DroYak_CAF1 7387 120 - 1
UUGACGGUCAAGUCGAAAAAUGAGUCCGGCAAAUCGUCUGCGUUUUUCUUGGAUUCGUCCAAGGAGAAGAGUACAGCCUGACGGGGACCAAUUACUCUCACAACUGGGGGAGCCCUGCCU
(((((......)))))...........((((...((((.((.(((((((((((....)))))))))))(....).))..))))(((........((((((....))))))..))))))). ( -34.90)
>consensus
UUGACGGUCAAGUCGAAAAAUGAGUCCGGCAGGUCAUUCGCAUUUUUCUUGGAUUCGUCCAAGGAAAAGAGUACAGCCUGGCGUGGCCCAAUUAUUUUCACCACUGGUGGAGCCCUGCCU
(((((......)))))...........((((((.(.(((((......((((((....))))))(((((((((...(((......)))...))))))))).......)))))).)))))). (-34.14 = -34.82 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:56 2006