Locus 1392

Sequence ID 3R_DroMel_CAF1
Location 4,064,423 – 4,064,531
Length 108
Max. P 0.872941
window2294

overview

Window 4

Location 4,064,423 – 4,064,531
Length 108
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 78.21
Mean single sequence MFE -43.02
Consensus MFE -26.26
Energy contribution -27.23
Covariance contribution 0.98
Combinations/Pair 1.22
Mean z-score -1.92
Structure conservation index 0.61
SVM decision value 0.88
SVM RNA-class probability 0.872941
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4064423 108 + 27905053
GCACCCCUGUUGCGGAGCCUUAAACUUACGGUCUUGCCAUGGCCAUAUGGUCCUGUAGAGCGGUGCGUCGCUGUUGCGGCGUGCUGCUCGAAAUGUGUGCAUUCCGCG
...........((((((((..........)))..((((((((((....)))).....((((((..((((((....))))))..)))))).....))).))).))))). ( -45.40)
>DroSec_CAF1 1237 108 + 1
GCACCCCUGUUGCGGAGCCUUACACUUACGGUCUUGCCGUGGCCAUAUGGUCCUGUAGAGCGGUGCGUCGCUGUUGCGGCAUGCUGCUCGAAGUGUGUGCAUUCCGCG
...........(((((((..(((((((((((.....))))((((....)))).....(((((((..(((((....)))))..))))))).))))))).))..))))). ( -47.70)
>DroSim_CAF1 1243 108 + 1
GCACCCCUGUUGCGGAGCCUUACACUUACGGUCUUGCCGUGGCCAUAUGGUCCUGUAGAGCGGUGCGUCGCUGUUGCGGCGUGCUGCUCGAAGUGUGUGCAUUCGGCG
(((((.((..(((((..((......((((((.....))))))......))..)))))((((((..((((((....))))))..))))))..)).).))))........ ( -49.30)
>DroYak_CAF1 1231 108 + 1
GCACCCCUGUUACGGAGCCUUACACUUACGGUCUUCCCGUGGCCAUAAGGUCCUGCAGAGCGGUGCGUCGCUGUUGCGGCAUGCUGCUCAAAGUGGGUGCAUUCCGCA
((((((((....(((..(((((...((((((.....))))))...)))))..)))..(((((((..(((((....)))))..)))))))..)).))))))........ ( -50.10)
>DroMoj_CAF1 1130 91 + 1
-----------------UGCCACACUUACGGUCUUUCCAUGGCCAUAUGGUCCCGUGGAGCGGUGCGUCGCCAUUGCUGCAUGCUGCUCAAAGUGCCGGCAAUCGUCG
-----------------((((.(((((((((.....(((((....)))))..)))).(((((((..((.((....)).))..))))))).)))))..))))....... ( -33.50)
>DroAna_CAF1 1176 108 + 1
UUAUCCUCGAAGUGGUAUCCCACACUUACAGUCUUUCCAUGUCCAUAUGGCCCUGUGGAGCGAUGAGUGGCCAUCGCUGCGUGCUGCUCGAAGUGAACGCACUCAUCA
.....(((...((((....))))...(((((.....(((((....)))))..)))))))).((((((((.(..(((((.((.......)).)))))..))))))))). ( -32.10)
>consensus
GCACCCCUGUUGCGGAGCCUUACACUUACGGUCUUGCCAUGGCCAUAUGGUCCUGUAGAGCGGUGCGUCGCUGUUGCGGCAUGCUGCUCGAAGUGUGUGCAUUCCGCG
((((.((......)).......(((((((((.....(((((....)))))..)))).(((((((..(((((....)))))..))))))).))))).))))........ (-26.26 = -27.23 +   0.98)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:55 2006