| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,056,398 – 4,056,496 |
| Length | 98 |
| Max. P | 0.668894 |
| Location | 4,056,398 – 4,056,496 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 69.32 |
| Mean single sequence MFE | -29.85 |
| Consensus MFE | -5.54 |
| Energy contribution | -6.18 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.50 |
| Mean z-score | -2.41 |
| Structure conservation index | 0.19 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.668894 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4056398 98 + 27905053 CCUGCUGUUU-----UUCUCAAUGAAA--AAGUG-----CAGGAAAAGCGGCCCAAUUGUCGCCCAGGCUGCUGUAGCUCAUUAGCAGC----CACAGCAGC----GCAUAAAGAAAU (((((..(((-----(((.....))))--))..)-----))))....(((((......)))))....((((((((.((((....).)))----.))))))))----............ ( -37.10) >DroSec_CAF1 60282 98 + 1 CCUGCUGUUU-----UUCUCAAUGAGA--AUGUG-----CAGGAAAAGCGGCCCAAUUGUCGCCCAGGCAUCUGCAGCUCAUUAGCAGC----CACAGCAGC----GCAUAAAGAAAU .(((((((..-----((((.((((((.--...((-----((((....(((((......))))).......)))))).)))))))).)).----.))))))).----............ ( -28.30) >DroSim_CAF1 60052 98 + 1 CCUGCUGUUU-----UUCUCAAUGAGA--AAGUG-----CAGGAAAAGCGGCCCAAUUGUCGCCCAGGCAGCUGCAGCUCAUUAGCAGC----CACAUCAGC----GCAUAAAGAAAU (((((...((-----(((((...))))--))).)-----))))....(((.......((((.....))))(((((.........)))))----........)----)).......... ( -28.50) >DroEre_CAF1 46286 74 + 1 CCUGCAGUUU-----UUCUCAAUGA----AAGUG-----CAGAAGAGGAGUCC-----------CAGGCAGCUGGAGCUCAUUAGCAG-------------------CAUAAAGAAAU .((((..(((-----((((..((..----..)).-----.)))))))(((..(-----------(((....))))..)))....))))-------------------........... ( -21.40) >DroYak_CAF1 63460 100 + 1 CCUGCAGUUU-----UUCUCAAUGA----AAGUG-----CAGAAAAAGAGUCCCAAUUGCCGCCCAGGCAGCUGGAGCUCAUUAGCAGC----CAGUGGAGCCACUGCAUAAAGCAAU .(((((.(((-----(.......))----)).))-----))).....(((..(((.(((((.....))))).)))..))).......((----.((((....)))))).......... ( -34.90) >DroAna_CAF1 47570 114 + 1 AGAGCCAUUUAUUCAUGCCCAGUGAAUAAAGGUGGCUUGGAAUGAAAAUUAUACAAGGAUCGUCCUGGCAAUAGGACCUCAUUAGCAGUGAGUCAGUGAAAU----GGAGAAAGAAAU .(((((((((((((((.....))))))))..)))))))...............((..((..((((((....))))))(((((.....)))))))..))....----............ ( -28.90) >consensus CCUGCUGUUU_____UUCUCAAUGA_A__AAGUG_____CAGGAAAAGCGGCCCAAUUGUCGCCCAGGCAGCUGGAGCUCAUUAGCAGC____CACAGCAGC____GCAUAAAGAAAU .((((..........................................(((((......))))).(((....)))..........)))).............................. ( -5.54 = -6.18 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:51 2006