Locus 1385

Sequence ID 3R_DroMel_CAF1
Location 4,048,497 – 4,048,604
Length 107
Max. P 0.991488
window2283

overview

Window 3

Location 4,048,497 – 4,048,604
Length 107
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 82.21
Mean single sequence MFE -34.08
Consensus MFE -25.80
Energy contribution -25.92
Covariance contribution 0.12
Combinations/Pair 1.21
Mean z-score -2.77
Structure conservation index 0.76
SVM decision value 2.27
SVM RNA-class probability 0.991488
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4048497 107 - 27905053
CGUUGGUGGGGGGGGGGGGGUGGCGUAGCAAGUCGGGGCUAUAAUGCCUGCAUAUAAACAA-AGUAAGUAUGUAGGCUUGUGGCAAGGUCUACGCAAAUGCAAACGCC
.........((.(...(.(...((((((....((...(((((((.((((((((((......-.....)))))))))))))))))..)).))))))...).)...).)) ( -34.70)
>DroSec_CAF1 52537 94 - 1
UGGUGGGGGGCG---GG----------GCAAGUCGGGGCUAUAGUGCCUGCAUAUAAUCAA-AGUAAGUAUGUAGGCUUGUGGCAAGGUCUACGCAAAUGCAAACGCC
.((((....(((---..----------((.((((...(((((((.((((((((((......-.....)))))))))))))))))..)).))..))...)))...)))) ( -33.20)
>DroSim_CAF1 51744 94 - 1
UGGUGGUGGGCG---GG----------GCAAGUCGGGGCUAUAAUGCCUGCAUAUAAACAA-AGUAAGUAUGUAGGCUUGUGGCAAGGUCUACGCAAAUGCAAACGCC
.((((((((((.---.(----------(....))...(((((((.((((((((((......-.....)))))))))))))))))...))))))((....))...)))) ( -35.10)
>DroEre_CAF1 38367 91 - 1
----GGGGGGCG---GG----------GCAAGUCGGGGCUACAAUGCCUGCAUAUAUACGAAUGUAUGUAUGUCGGUUGGUGGCAAGGUCUACGCAAAUGCAAACGCC
----....((((---((----------((........(((((...(((.((((((((((....)))))))))).)))..)))))...))))..((....))...)))) ( -33.40)
>DroYak_CAF1 55256 89 - 1
----GG--GGCG---GG----------GCAAGUCGAGGCUAUAAUGCCUGCAUAUAUGUAUAUAUAUAUAUGUCGACUUGUGGCAAGGUCUACGCAAAUGCAAACGCC
----..--((((---..----------((((((((((((......))))((((((((((....)))))))))))))))))).(((..((....))...)))...)))) ( -34.00)
>consensus
_G_UGGGGGGCG___GG__________GCAAGUCGGGGCUAUAAUGCCUGCAUAUAAACAA_AGUAAGUAUGUAGGCUUGUGGCAAGGUCUACGCAAAUGCAAACGCC
........((((..................((((...(((((((.((((((((((..((....))..)))))))))))))))))..)).))..((....))...)))) (-25.80 = -25.92 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:44 2006