Locus 1384

Sequence ID 3R_DroMel_CAF1
Location 4,042,540 – 4,042,644
Length 104
Max. P 0.735587
window2282

overview

Window 2

Location 4,042,540 – 4,042,644
Length 104
Sequences 3
Columns 114
Reading direction reverse
Mean pairwise identity 81.87
Mean single sequence MFE -20.90
Consensus MFE -14.56
Energy contribution -15.12
Covariance contribution 0.56
Combinations/Pair 1.16
Mean z-score -1.90
Structure conservation index 0.70
SVM decision value 0.44
SVM RNA-class probability 0.735587
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4042540 104 - 27905053
CCAAUCUCCUUUUGGUUUCCACCAUCAC----------UCCACUCCACUUACUCCUCCUUUCCCAUUCCCCAUUUUAGGUGACACGUUCUGGGAAAGUAAUACUGGCAAAGCUA
(((.........((((....))))....----------...................((((((((.((.((......)).)).......))))))))......)))........ ( -14.50)
>DroSec_CAF1 47261 113 - 1
CCAACCUCCUUUUGGCUUCCACCAUCACUUCUCUCCACUCCACUCCACUUACUCCUCUU-UUCCCUUCCCCAUUUCAGGUGACACGUUCUGGGGAAGUAAUACUGGGACAGGUA
...((((.....(((......)))............................((((...-.(..((((((((.....(....)......))))))))..)....)))).)))). ( -22.70)
>DroYak_CAF1 49135 114 - 1
UCAACCUCCUGUUGGGUUCCACCAUCACUGCCCUCCACUCCACGCCUCUCACUCCUCCUUUCCCAUUCCCCAUUUCAGGUGACACGUUCUGGGGAAGUCAUAUGGGUACAGGUA
.......(((((.((((............))))............................(((((((((((.....(....)......))))))......))))).))))).. ( -25.50)
>consensus
CCAACCUCCUUUUGGCUUCCACCAUCACU_C_CUCCACUCCACUCCACUUACUCCUCCUUUCCCAUUCCCCAUUUCAGGUGACACGUUCUGGGGAAGUAAUACUGGCACAGGUA
.......((((((((......)))...................((((.(((((.((((........((.((......)).))........)))).)))))...))))))))).. (-14.56 = -15.12 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:43 2006