Locus 1382

Sequence ID 3R_DroMel_CAF1
Location 4,041,247 – 4,041,345
Length 98
Max. P 0.697900
window2279

overview

Window 9

Location 4,041,247 – 4,041,345
Length 98
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.56
Mean single sequence MFE -23.58
Consensus MFE -16.52
Energy contribution -16.43
Covariance contribution -0.08
Combinations/Pair 1.05
Mean z-score -1.27
Structure conservation index 0.70
SVM decision value 0.34
SVM RNA-class probability 0.697900
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4041247 98 - 27905053
CA-CGA---AACCCACCAUAA------------------GCCACAGCCGCAUCAUUGUUAGCCCAGUGCGCAGUGGCAGCCAACACUCAUGUUUAAAUUAUGAUGGCUUCUAGCUUGCGC
..-...---.........(((------------------((....(((((..(((((......)))))....)))))(((((....(((((.......))))))))))....)))))... ( -23.40)
>DroPse_CAF1 28112 91 - 1
CA-CAA---------CCGC-A------------------ACCGCAUCCGCAUUAUUGUUAGCCCAGUGCGCAGUGGCAGCCAACACUCAUGUUUAAAUUAUGAUGGCUUCUAACUUGCGC
..-...---------.(((-(------------------(((((...((((((...........))))))..)))).(((((....(((((.......))))))))))......))))). ( -22.40)
>DroEre_CAF1 29514 95 - 1
CA-CGAUGUAGCGCACCAUAA------------------------GCCGCAUCAUUGUUAGCCCAGUGCGCAGUGGCAGCCAACACUCAUGUUUAAAUUAUGAUGGCUUCUAGCUUGCGC
..-.((((..((.........------------------------))..))))((((......))))(((((((((.(((((....(((((.......)))))))))).)))..)))))) ( -27.10)
>DroYak_CAF1 47709 116 - 1
CA-CGA---AACUCACCAUAAACCGCAGCCACAGCCACAGCCACAGCCGCAUCAUUGUUAGCCCAGUGCGCAGUGGCAGCCAACACUCAUGUUUAAAUUAUGAUGGCUUCUAGCUUGCGC
..-...---..............((((((....(((((.(((((.((.(((....)))..))...))).)).)))))(((((....(((((.......))))))))))....)).)))). ( -31.20)
>DroAna_CAF1 31687 90 - 1
CAACCC---UAACCACAAUA--------------------CGACAACCACAUCAUUGUUAGCCCA-------GUGGCAGCCAACACUCAUGUUUAAAUUAUGAUGGCUUCUAACUUGCGC
......---...........--------------------.(((((........))))).((...-------.(((.(((((....(((((.......)))))))))).)))....)).. ( -15.00)
>DroPer_CAF1 28503 91 - 1
CA-CAA---------CCGC-A------------------ACCGCAUCCGCAUUAUUGUUAGCCCAGUGCGCAGUGGCAGCCAACACUCAUGUUUAAAUUAUGAUGGCUUCUAACUUGCGC
..-...---------.(((-(------------------(((((...((((((...........))))))..)))).(((((....(((((.......))))))))))......))))). ( -22.40)
>consensus
CA_CGA___AAC_CACCAUAA___________________CCACAGCCGCAUCAUUGUUAGCCCAGUGCGCAGUGGCAGCCAACACUCAUGUUUAAAUUAUGAUGGCUUCUAACUUGCGC
...............................................((((.....((((((((........).)))(((((....(((((.......))))))))))..)))).)))). (-16.52 = -16.43 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:40 2006