Locus 1378

Sequence ID 3R_DroMel_CAF1
Location 4,018,889 – 4,018,984
Length 95
Max. P 0.549838
window2272

overview

Window 2

Location 4,018,889 – 4,018,984
Length 95
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 80.79
Mean single sequence MFE -30.94
Consensus MFE -22.92
Energy contribution -24.52
Covariance contribution 1.60
Combinations/Pair 1.00
Mean z-score -1.47
Structure conservation index 0.74
SVM decision value 0.03
SVM RNA-class probability 0.549838
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4018889 95 - 27905053
--------UGUUG---------CUGCUGCUGCGUGUUGCUGCCGUGAAAUUGCUGCGGUUUGUUCAAAUAAUUGCGCAUGCAAAUUUCUAUUAGUCACACGUGGCCUCCGCA
--------...((---------(.(..((..(((((.((((....((((((((((((..((((....))))...)))).)).))))))...)))).)))))..))..).))) ( -31.30)
>DroPse_CAF1 5814 108 - 1
GUUGGUGGUGCCACUGGUGCUGCCACUGCAGCGUGU---UGCCGUGUAAUUGCUGCGGUUUGUUCAAAUAAUUGCGCAUGCAAAUUUCUAUUAGUCACACGUGGCCUCCGC-
....((((.(((((..((((((..(((((((((.((---(((...))))))))))))))............((((....))))........))).)))..)))))..))))- ( -35.60)
>DroSim_CAF1 25142 89 - 1
--------UG---------------CUGCUGCGUGUUGCUGCCGUGAAAUUGCUGCGGUUUGUUCAAAUAAUUGCGCAUGCAAAUUUCUAUUAGUCACACGUGGCCUCCGCA
--------.(---------------(.((..(((((.((((....((((((((((((..((((....))))...)))).)).))))))...)))).)))))..))....)). ( -29.50)
>DroYak_CAF1 25120 90 - 1
----------------------CUGCUGCUGCGUGUUGCUGCCGUGAAAUUGCUGCGGUUUGUUCAAAUAAUUGCGCAUGCAAAUUUCUAUUAGUCACACGUGGCCUCCGCA
----------------------..((.((..(((((.((((....((((((((((((..((((....))))...)))).)).))))))...)))).)))))..))....)). ( -29.50)
>DroPer_CAF1 6087 108 - 1
GUUGGUGCUGCCACUGGGGCUGCCACUGCAGCGUGU---UGGCGUGUAAUUGCUGCGGUUUGUUCAAAUAAUUGCGCAUGCAAAUUUCUAUUAAUCACACGUGGCCUUCGC-
....(((..(((((....(((((....)))))((((---.((((......))))..((((.((..((((..((((....))))))))..)).)))))))))))))...)))- ( -28.80)
>consensus
________UG____________CCACUGCUGCGUGUUGCUGCCGUGAAAUUGCUGCGGUUUGUUCAAAUAAUUGCGCAUGCAAAUUUCUAUUAGUCACACGUGGCCUCCGCA
...........................(((((((((.((((....((((((((((((..((((....))))...)))).)).))))))...)))).)))))))))....... (-22.92 = -24.52 +   1.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:34 2006