Locus 1374

Sequence ID 3R_DroMel_CAF1
Location 4,008,376 – 4,008,478
Length 102
Max. P 0.741616
window2264

overview

Window 4

Location 4,008,376 – 4,008,478
Length 102
Sequences 4
Columns 106
Reading direction reverse
Mean pairwise identity 90.54
Mean single sequence MFE -18.20
Consensus MFE -15.72
Energy contribution -15.78
Covariance contribution 0.06
Combinations/Pair 1.06
Mean z-score -1.59
Structure conservation index 0.86
SVM decision value 0.45
SVM RNA-class probability 0.741616
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4008376 102 - 27905053
---UCGAACUCUUUUUAAGCACUUCCCCGCUGGAAACCCUCGAAUCAGCAUCCUUUUUGCCAGUUCACAGGUGCAGCCCCACUUUUAACCCU-UUGCGCCAAAAAC
---..(((((..((((.(((........))).))))...........(((.......))).)))))...(((((((................-)))))))...... ( -17.99)
>DroSec_CAF1 14006 102 - 1
---UCGAACACUUUUUAAACACUUCCCCGCUGGAAACCCACGAAUCAGCAUCCUUUUUGCUAGUUCACAGGUGCAGCCCCACUUUUAACCCU-UUGCGCCAAAAAC
---..((((..................((.(((....)))))....((((.......)))).))))...(((((((................-)))))))...... ( -19.99)
>DroSim_CAF1 14592 102 - 1
---UCGAACACUUUGUAAGCACUUCCCCGCUGGAAACCCACGAAUCAGCAUCCUUUUUGCCAGUUCACAGGUGCAGCCCCACUUUUAACCCU-UUGCGCCAAAAAC
---..((((..(((((.(((........)))((....)))))))...(((.......)))..))))...(((((((................-)))))))...... ( -19.59)
>DroYak_CAF1 14071 106 - 1
CUGUCGAACUCUCUUCACACCCCUCCCCGCUGGAACAACACGAAUCAGCAUCCUUUUUGCCAGUUCACAGGUGUAGCCCCACUUUUAACCCUUUUGCGCCAAAAAU
.(((.(((((.............(((.....))).............(((.......))).))))))))(((((((.................)))))))...... ( -15.23)
>consensus
___UCGAACACUUUUUAAACACUUCCCCGCUGGAAACCCACGAAUCAGCAUCCUUUUUGCCAGUUCACAGGUGCAGCCCCACUUUUAACCCU_UUGCGCCAAAAAC
.....((((.............((((.....))))............(((.......)))..))))...(((((((.................)))))))...... (-15.72 = -15.78 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:26 2006