Locus 1373

Sequence ID 3R_DroMel_CAF1
Location 4,007,931 – 4,008,025
Length 94
Max. P 0.848234
window2263

overview

Window 3

Location 4,007,931 – 4,008,025
Length 94
Sequences 4
Columns 100
Reading direction forward
Mean pairwise identity 95.36
Mean single sequence MFE -32.53
Consensus MFE -26.47
Energy contribution -26.47
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -3.01
Structure conservation index 0.81
SVM decision value 0.78
SVM RNA-class probability 0.848234
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4007931 94 + 27905053
GAACUGCGAAAGAUAGUUUGCUCAUAUCUAGAUGCAAAUUAUUAAUAUGGAGCUCAUAUAUUUUCGCGGCAAGUUGGCU------CCUUUGGGGCCGCCC
...((((((((((((((((((((.......)).)))))))))).(((((.....)))))..))))))))......((((------((...)))))).... ( -31.40)
>DroSec_CAF1 13474 94 + 1
GAACUGCGAAAGAUAGUUUGCUCGUAUCUAGAUGCAAAUUAUUAAUAUGGAGCUCAUAUAUUUUCGCGGCAAGUUGGCU------CCUUCGGGGCCGCCC
...((((((((((((((((((((.......)).)))))))))).(((((.....)))))..))))))))......(((.------((....))))).... ( -32.90)
>DroSim_CAF1 14059 94 + 1
GAACUGCGAAAGAUAGUUUGCUCGUAUCUAGAUGCAAAUUAUUAAUAUGGAGCUCAUAUAUUUUCGCGGCAAGUUGGCU------CCUUUGGGGCCGCCC
...((((((((((((((((((((.......)).)))))))))).(((((.....)))))..))))))))......((((------((...)))))).... ( -32.10)
>DroYak_CAF1 13515 100 + 1
GAACUGCGAAAGAUAGUUUGCUCGUAUCUAGAUGCAAAUUAUUAAUAUGGAGCUCAUAUAUUUUCGCGGCAAGUUGGCUCCUGCUCCUUUGGGGCCGCGC
...((((((((((((((((((((.......)).)))))))))).(((((.....)))))..))))))))...((.((((((.........)))))))).. ( -33.70)
>consensus
GAACUGCGAAAGAUAGUUUGCUCGUAUCUAGAUGCAAAUUAUUAAUAUGGAGCUCAUAUAUUUUCGCGGCAAGUUGGCU______CCUUUGGGGCCGCCC
...((((((((((((((((((((.......)).)))))))))).(((((.....)))))..))))))))......((((.............)))).... (-26.47 = -26.47 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:25 2006