Locus 1372

Sequence ID	3R_DroMel_CAF1
Location	4,007,826 – 4,007,919
Length	93
Max. P	0.741772

overview

Window 2

Location	4,007,826 – 4,007,919
Length	93
Sequences	4
Columns	100
Reading direction	reverse
Mean pairwise identity	92.57
Mean single sequence MFE	-23.98
Consensus MFE	-19.80
Energy contribution	-20.43
Covariance contribution	0.63
Combinations/Pair	1.11
Mean z-score	-1.78
Structure conservation index	0.83
SVM decision value	0.45
SVM RNA-class probability	0.741772
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4007826 93 - 27905053
UACUUCUCUUAAUUUCCAGCUGCUAAUUUAUGCAAAUUUCCCUCUAGUCCUAGUGCCGCCCCACUCGCACACGCACAAGGCGGUUGGCAGCAG-------
..................(((((((..................(((....))).((((((......((....))....)))))))))))))..------- ( -22.10)
>DroSec_CAF1 13369 93 - 1
UACUUCUCUUAAUUUCCAGCUGCUAAUUUAUGCAAAUUUGGCUCUAGUCCUAGUGCCAUCCCACUCGCACACGCACAAGACGGCUGGCAGCAG-------
...............(((((((((..............((((.(((....))).))))........((....))...)).)))))))......------- ( -22.20)
>DroSim_CAF1 13954 93 - 1
UACUUCUCUUAAUUUCCAGCUGCUAAUUUAUGCAAAUUUGGCUCUAGUCCUAGUGCCAUCCCACUCGCACACGCACAAGACGGCUGGCAGCAG-------
...............(((((((((..............((((.(((....))).))))........((....))...)).)))))))......------- ( -22.20)
>DroYak_CAF1 13403 100 - 1
UACUUCUCUUAAUUUCCAGCUGCUAAUUUAUGCAAAUUUGGCUCUAGUCCUAGUGCCAUCCCACUCGCACACGCACAAGGCGGCUGGCAGUAGGCAGCAG
..((.((((((....(((((((((..............((((.(((....))).))))........((....))....)))))))))...)))).)).)) ( -29.40)
>consensus
UACUUCUCUUAAUUUCCAGCUGCUAAUUUAUGCAAAUUUGGCUCUAGUCCUAGUGCCAUCCCACUCGCACACGCACAAGACGGCUGGCAGCAG_______
...............(((((((((..............((((.(((....))).))))........((....))....)))))))))............. (-19.80 = -20.43 +   0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:25 2006